1. Home
  2. Mutant Lines
  3. 53-3598-1

53-3598-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23170130 [Map]; Strand: c
      • AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon2 (CDS)
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon2 (CDS)
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -932; Region: promoter
    Flanking Genome Sequence: 53-3598-1 - 5-prime edge 
    CCGTTTCTCT TTGTACCTCA AAACACTTGC TTCTCGCATT CCACTGTCTC 
    CGAACAAATC AATCTGAGCT AATCTAGCCT GCCCCAAAAC ACACACGCCA 
    CATTAGTTCA TGTTCAACAT TATTAATAAC ACAAAATACT AATCAATTGA 
    CAAAAATGAA TTTCTAGTTA ACTTATTTTG TAGACTACTA GACTTTATGC 
    TAAAAGGAGT ATTCGACGAA ACGGATATCT ACAAAATAAA TTTTGAACCT 
    CCTCATTTAT CCTATACGTG AAAATTCACG TGCACAGTCT ATAAAGTTTT 
    CATTGGACAA ATAAAAAGCA GCTTTTTTTT TCTTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23170249 [Map]; Strand: c
      • AT5G57180.1 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon2 (CDS)
      • AT5G57180.2 - [+] show detail - chloroplast import apparatus 2
        Distance: 0; Region: exon2 (CDS)
      • AT5G57181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -813; Region: promoter
    Flanking Genome Sequence: 53-3598-1 - 3-prime edge 
    AACGTCGAAC TCGTCTTTTT TCGAAGAAAA TTCGATACCA AGTTCGCAAA 
    CTCAATGCTG ATCAACGTCC TCGAATGAAG GTATCTAACC CATCTTAGTC 
    AGTGGTTAAA AACATGTAGG TTTTTTTTAC CATCCTTCAA AATTTGTTTT 
    GAATCAGCAT AATAAGACTA GCTTTAGTTT TCAGATTTAA AGTAGATGAG 
    AAAACTCTTG TTGAGTTTTT CTATTCGTTT TTTTTCTTCA AGAAGATGAA 
    ATAAGCTTTC TTTTGGGTAT CTTTATTCCA AATGAACCAA ACCGAACAAG 
    TAAAGGAAAC TACGTACCAC AAGCCAAACA AAAAGATTTA AAACCAAACC 
    AAAGGTTAAA TATATTAAGA ATTGTCATCT AAAGGAAACA AAACTAACTA 
    ATAACGTTAG ATTGAGGTCA AGGGCTAGGG ATATATACAT TAGATTTGAT 
    TAAGACAAGA ACCTAATATT AATGTTTTCT TTTCTTTTTG NGGTTGGTGA 
    TGGGA

AT5G57180.1

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.2); Has 1391 Blast hits to 1370 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 7; Plants - 1340; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57180.2

Model type
Protein coding
Short Description
chloroplast import apparatus 2
Curator Summary
Transcription regulator responsible for specific upregulation of the translocon genes atToc33 and atToc75 in leaves. Involved in protein import into chloroplast.
Computational Description
chloroplast import apparatus 2 (CIA2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1820 Blast hits to 1799 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 7; Plants - 1718; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR