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53-3613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9499660 [Map]; Strand: w
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: -2347; Region: intergenic
      • AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 846; Region: intergenic
    Flanking Genome Sequence: 53-3613-1 - 5-prime edge 
    CATGGAAGAT GATGAGAGAG AAAAGAAAAA GATCAGCAAT GCATATTGAT 
    TAGTGAGAGA GAGAGAGAGA AAAGAGGAGA AACTTTATCT TCCTTCCTTT 
    CCCGGANGGT CAGTAATAGA TACNTTACTG TACAAAGTAC NTTTTTAGAC 
    TAGAAGAGTA GGGAGTATGG TAACAGTTGA GACATAAATG GTACAATAAT 
    AAATTAGCTT CTTTTCCTCC ATCGCATTCA TATTAGAAAA AATTGGCAAA 
    GTAGACAGTT TTAGGAACTT TACAACTTTA ACTCTTTATG ATATAATTAA 
    AGAGTGCAGC GGCATGGGGG AACAGCAGCG ACATGTTTTC TCATCGACGT 
    AGGATAGCTG GATGATACTT CATGGTTTGG AAGTGGACCA GACAATGTCT 
    ACTGCAGGAA GTTAATAAGC TCTTTCCTTC ACCCGAAGGG TTGTTCCAGC 
    TTTGGCCGAA GTTAAGCCAA AAACGCTTCC GCCCTTTGGC TATTGAATCA 
    GCGGATATGC AAATGTTGCT GATGACGAGT GACTTGCTAT GTAAAATATT 
    TCCAACACAT TCTTGTTGTT TTCTGTACCC AAAGTCTGAT TTATTCATTG 
    CTAATAAAGA GAAAAACAAC CTTTACTAAC ATAAACATTG AGATCTATGT 
    TTTAAAAATG GCAAGACTAT TTTGGTACAA TACAAAACCA TGCCAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9544293 [Map]; Strand: w
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3613-1 - 3-prime edge 
    CTTCCATGGC GACGGCTTCT TCTTATGGCA GCCGGAGATA CGACGTTTTC 
    CCAAGCTTCA GTGGGCAAGA TGTTCGCAAG ACGTTCCTCA GCCATCTTCT 
    CGAGGCGCTC GAGCGCAGGT CAATCAACAC ATTCGTGGAT CATGGGATCG 
    AGAGAAGCCG CCCGATAGCC CCTGCGCTTT TATTGGCGAT TAGAGAATCA 
    AGGATCGCAA TCGTCGTCTT CTCTAAGAAA TATGCTTCAT CCACCTGGTG 
    CTTGAATGAA CTGGTTGAGA TCCACAAGTG TTATAAGGAA TTGGATCAAA 
    TGGTGATTCC GATTTTCTAC AACGTTAATA CTTCGGAAGT TAGTAAACAG 
    GCCGGAGAAT TTGGCCAGGC CTTCGAAAAT ACGTGCAAGG ACAAAACAGA 
    GGATGATAAA CAAAGATGGA TAAGTGCTCT AGCAGCGGTA GCAAAAATGG 
    CCGGAGAAGA TCTTCGAAAC TGGTATCTTG TTTCGTATGC TATATAACTT 
    GTGTGTGTTT TC

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16890.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary
Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description
SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR