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53-3619-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9840585 [Map]; Strand: w
      • AT2G23100.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -849; Region: promoter
      • AT2G23110.1 - [+] show detail - Late embryogenesis abundant protein, group 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G23110.2 - [+] show detail - Late embryogenesis abundant protein, group 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3619-1 - 5-prime edge 
    CCTCTCACGG GCAAGCATTT AGCAAAACGC ATAACAAGAT GGAGGATCAG 
    AAAAAGCCAC CAACGACCGA GCAAGAAGTG AAAGAAGTTA AAAACGACGA 
    CCTCGAGTCT ATCAAGACCC CATACTTGGA CTATGATAAC TTGGAAGATT 
    ACAAGATGAA AGGTTACNGG AGCACAAGGC CACCAAGAGC CTAAACTCGG 
    TATGGGAGGT GGAGCCACCG ATGCTCCCAC TCCTTCAGGC GGTCTTGGAC 
    GCGGTGGAGG CGCTGCATCG ACGGATCTTT CTTCTACCGA TGCGATTAAC 
    CGTCAGGGCG TTCCGTGAAA AACTTTATTA TAGGATCGTC AACAAACACA 
    AAGGGTAGCT TAGCTTGTCT AATAACTGAT CAAGTTTCGG TTCTTTAACG 
    TGTTTCAGAA AACAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9840465 [Map]; Strand: w
      • AT2G23100.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -729; Region: promoter
      • AT2G23110.1 - [+] show detail - Late embryogenesis abundant protein, group 6
        Distance: 0; Region: exon1 (5UTR)
      • AT2G23110.2 - [+] show detail - Late embryogenesis abundant protein, group 6
        Distance: -64; Region: promoter
    Flanking Genome Sequence: 53-3619-1 - 3-prime edge 
    GAGGTTTACA CTTGCTGCTT ATATAGCTCA CGTATAGCTC GTATATTTCT 
    GACACGTGCG GTATACCGGT GGCAATTAGT AAGCTTCTCG ATATACGTGA 
    CTTTTATGTT AAGATTTACG TTATCTAAAC TAGGGTCCTA GAAGCATCTG 
    CAATTTAAAA AAAAAANCAA AAAACCNTTA AAAGTTTTNA AGTTTNATNC 
    AATNGTTTTT GACGTTTNGG GCAAAAAAGC CTT

AT2G23100.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G42280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23110.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein, group 6
Computational Description
Late embryogenesis abundant protein, group 6; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 6 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 6 (TAIR:AT2G23120.1); Has 37 Blast hits to 37 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23110.2

Model type
Protein coding
Short Description
Late embryogenesis abundant protein, group 6
Computational Description
Late embryogenesis abundant protein, group 6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 6 (InterPro:IPR018930); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 6 (TAIR:AT2G23120.1).
Link
InterPro Scan - TAIR