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53-3631-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24801744 [Map]; Strand: w
      • AT5G61720.1 - [+] show detail - Protein of unknown function (DUF1216)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3631-1 - 5-prime edge 
    CTGTTTATGA AACACAAGGG ACGTTCTCAT TACCCCTTTA CTTGAAAAAT 
    TTCCCCAAAC TGGGCAAAGA CTATGAGGCT TTCGCAAACA AAGGTATATC 
    GGACTTTTTG GGTGACCTAG AGGGTATGTG TCCTAAAACC GCAGAGTTCA 
    AGGATTTCTT TGAAAACTTG AAGGATTACA TGGCCTTCTT CAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24873604 [Map]; Strand: w
      • AT5G61950.1 - [+] show detail - Ubiquitin carboxyl-terminal hydrolase-related protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3631-1 - 3-prime edge 
    CCTGTAACNN TGNNATCTNC AGNGTNNTNN ATTACCNNNC TTCCGTCATA 
    ANANNCTNCT TCGTAAGAAG ACACCATCAG AACACATCTC TNCANACAGT 
    GATTGATTGC ATCTCGAAGG TTTNGTTGCC GTCGGATGAC CGATGANTCN 
    CCAGAGATNT TGTAGNGAGC ATAGGCTGGG AACAATCAAN GATTATANCC 
    GGGNNGNTCT GNAGAATATN AGGCAGGCGG TTGATATNNC NNGAGAGCCN 
    NNTGACNCNA GCNTNNNNCN ANCCTAGAGA TACCCANCAT GTGGATCNAT 
    TGNGGANTTA TGGANNACAC CNTGTGTGCA TTATCCGTTT GGGATNNNGT 
    NGGAATAGAA AANTCNNAAA AAGNCCCATA GNNCGNGTGA ATNGNCNAAT 
    ATGGGTTAAG AATTGAATGT GGAATGGTCT TCATGTTGAT GANCAACANC 
    NTTCCCTGAA AGTGCCCTGG AGAGCCACAC GTGATAAATN ANATNTTCCN 
    ATTTTTACAA AANNTGGNCA GTGATGTTGN NAAAACAATA ANAGGAACTC 
    TNGAGAGGTT GNTGGNTTTG CCGTTGAAGG AAANACTCTA NNTGGCTCGA 
    ACTTTTCTNG GATTTAAACG AACCAGAAAG ATAACCGANC CGGTTAANTG 
    GTTGTATCTA TNGACNGATG NCNNCCGATG NCNCNTGAGG NAATNNNTAT 
    NACAACNTTT GGNTCANCTG NGNCCTTTNN TT

AT5G61720.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1216)
Computational Description
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61950.1

Model type
Protein coding
Short Description
Ubiquitin carboxyl-terminal hydrolase-related protein
Computational Description
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT5G61940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR