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53-3632-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12572053 [Map]; Strand: c
      • AT3G30835.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -121; Region: promoter
    Flanking Genome Sequence: 53-3632-1 - 5-prime edge 
    ACTCGAGACT TACTTTTAAG AGAGAGAGAT TGTTGGAGCT TTTTCTTTTG 
    CTATTTGTGT GTAACAAATC AACTACTTCA CCGTATCTCT CAAAGACTTG 
    AAGCGTGGGG TTTTATAGAG ATTTAGATTA CTAGGTTTTG AATTTGTTTT 
    TCAACAAATC CACCCATGCA CCCACGTCAA TCGTAAATCT AGGAGTAGTG 
    GACTTGATCT CTCAACAACT CCTATTCTCA TGGTCTTTGA AGAAGCAACG 
    AGCGAGTCTC TAGGGACGTG AAACAGAACA ACTTGTTTCT CACGTTCACT 
    ATTCGACCCG ACATCTCCGG AGCTCCACCG CGAACTGGAC CTAACCATTA 
    AAGCCCATTT CTTATTCACA CACTTTGATT ATACTAAACC CAATTAGGTT 
    TTAATAAAAA TCGGCCCAAC ATTACAAACA TGAATCAGCA TATTAAAATG 
    TCAATTGATA TACCATTATT ATGTAGATTG TGTCATTTAT GATCGCCACA 
    CTATCTCTTT CCGTCCCCTT TTTTTTTCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14329453 [Map]; Strand: c
      • AT3G42180.1 - [+] show detail - Exostosin family protein
        Distance: -777; Region: promoter
      • AT3G42180.3 - [+] show detail - Exostosin family protein
        Distance: -777; Region: promoter
      • AT3G42174.1 - [+] show detail - transposable element gene
        Distance: -631; Region: promoter
    Flanking Genome Sequence: 53-3632-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    ATACTCTCGA GAGTATCGTA GAATTTGGTT CGTTAGAGCT GTTTTCGAGT 
    GGTGCGAAAA TAGTTTATAG AGGTTGTATC CTGGAATCCT TGAATCACAC 
    AGAAACCGTC ACACTACGGG TGATTCAAAG GGTTAAGGAA AGAGTTCATA 
    ACTCGACTCC TCTCATGTTC TTTCCTTAAT GTTTGTGATT TCGATTTCAA 
    TTGCCTTTAC GTAGTGTTTG CTAATTTTAG CTCCTACGGT CTTAACCCTT 
    TGAATCCGTT TTGTTCTATA AACATTAACG GATTGGAATT GAAATTTCAT 
    AAACGTGGGA AGCGTGAGTG TGTACATTGA GTTTACTGGT TGCGATTGGT 
    AAACGTCAAA CTCACTGTGA CGAGGACTTG CGAGTCTCGA CTTGGTTGTT 
    CTTTTGGAAA CAGAGAAACA TCAATCGAAG TCATCTTGGA GATTCGAAAA 
    TTAAGTGCAG CGTTTGTTAT AACTCAGCTT TGAATTGCGA TTATAAGCCC 
    GAGTACGTAA GCTGCAGCTT GTTATCTCTG TAAAAGAATC AACAATTGGT 
    GATTAGAGGT TCAATATCAG ACTTGAATTG AGATTCTATT GTACCGTACC 
    CTGCAGCTTT GTATTTGAGA ATTGAGATTC TAAAAGCTGT TTTGAAACCA 
    ATTGTTTTGT TATTTTGATC AGACTTTGAA TTGTGATTCT TAGACTGTTG 
    TGACCAGCAC CTTGTT

AT3G30835.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT3G42174.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.1e-277 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT3G42180.1

Model type
Protein coding
Short Description
Exostosin family protein
Computational Description
Exostosin family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: xylogalacturonan deficient 1 (TAIR:AT5G33290.1); Has 1473 Blast hits to 1466 proteins in 119 species: Archae - 0; Bacteria - 10; Metazoa - 369; Fungi - 4; Plants - 967; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G42180.3

Model type
Protein coding
Short Description
Exostosin family protein
Computational Description
Exostosin family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G20260.1); Has 54 Blast hits to 54 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR