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53-3642-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23709314 [Map]; Strand: c
      • AT5G58680.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3642-1 - 5-prime edge 
    CTTAAAACCA AACCTCTAAA AGAAGTTTTG ATGCAGTGAG TATTCAATCT 
    CATAGACTCA TAGCAATGGC GAATCACAAC AGTTTCACTT ACATGGACCA 
    TAGCTTCAGC GATATAAGTC TCAACTTTGA TTCCTCTGCT TTCAGCGATT 
    GTAACAGTGA CATATCCTGC GAGTTTCCAA CAACTACCTC CGAGAGCCGT 
    CAACGAAAAC TCTTCNTCTT TTGCGNCGNT GATAATTCCG ATGACGTGAT 
    CAGAAATCTC ATAACGCATC TTGAGTCATC TTCATCTACT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23709430 [Map]; Strand: c
      • AT5G58680.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -79; Region: promoter
    Flanking Genome Sequence: 53-3642-1 - 3-prime edge 
    GTTTTAAGAG TGTGAAGATA TGTGTTTGGG ACGCAACTGC AGAGAAAGAG 
    AGAACCTTGA TGGTTTTCTT TTAATTGATT TTAATTAAAT TAGACCAATA 
    CGATGATCCA GTTTCAGTGT TATTCTAGAA GTCAAATAAA GAATCTGTTG 
    TCAAAAAAGA CCAAGTCTTT AATTTTTTAT TAACGAGTGA CAAATTTTGA 
    TTTAGTCCGT TTTTCATATG CCAAAAAGTT CCACTCTCTT TGAAGTATTA 
    CTATTATTAT AAAGAAGAAA GAAACTCTGT TTTAAGGAAA CTCTGTGTTT 
    AAAGAAAGTG AAACCGCATG AGAAGTGTAA CTGAAACTAG TCTCTCGCCT 
    TTGCGATCAT ACAAAGGAAC AGAACGTATG CCTTGTCTCA GCNNCTGACA 
    CAGGCAAACA TGTCTGACCC GAGAAATCGT CCTTCTCTGG CATGTTGTAG 
    TCGTGAACTT CTATTCT

AT5G58680.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR