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53-3646-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11581113 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 566; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 5403; Region: intergenic
    Flanking Genome Sequence: 53-3646-1 - 5-prime edge 
    ATTCTATTGC CAAGTCAATT TTAGGTGAAG TATTCCCCTT CCCATTTCTG 
    TTTCTTGTAT TTAATCTCTT TGTTGATTCC GAAAATCACA CAATGAATTT 
    GTTTAAAAAG GGTGAAACAA ATTCACNTTT AACTCTCTTG CTATTTTGTA 
    ATCAAAGACG CAATGAAAAA GATGAATAAA ACNTGCTTAG AGATAAAGTT 
    AGGGTCTTTG CTCTAGAACA AGTTAGAAAA TTAGGGTTTT TCGTATGATT 
    CCTAGAATAT GCTAAACACT ATGATTCCTA GGGACAAACC CCTCTATTTA 
    TACACTATTA AGACGGTTTA AAGATATGCT AAACTTCCAC TTCTTCGAGG 
    CTTGAATCTT CTAATTTTCT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11581229 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 682; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 5287; Region: intergenic
    Flanking Genome Sequence: 53-3646-1 - 3-prime edge 
    AATAGAATCG CAAAGTTCTT CTTACCAATA AAGAAAAATA TTAATCATAA 
    AATTATTATT TTTTCTTTCT TGTGTCTATT TTTGTGTTGC GTTTGAGAGT 
    ATTTTGAGTT TCTTTGCATG TATGTGATAT TTTCTTTTTT TTGTATCGTG 
    TTTGAATTCT GTTGTCTTTG GGTGTGTTTT GAGTTCG

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR