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53-3650-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15328715 [Map]; Strand: w
      • AT5G38350.1 - [+] show detail - Disease resistance protein (NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3650-1 - 5-prime edge 
    CAAAATGAAG CAACTATGAC CGAAAAGATC GCTACAGATG TTTCAAACAT 
    GCTGAATAAT TACTCACCGT CAAGAGATTT TGATGGTTTG ATTGGGATGG 
    ATGCTCATAT GAAAGAAATG GAATCGTTAT TATGCCTAGA CTCTGATGAA 
    GTAAGGATGA TTGGGATTTG GGGTCCGTCT GGGATTGGGA AGACCACCAT 
    TGCCAGAGTC TTATATAGCC AATTTTCTGA AAATTTTGAA TTGAGTATCT 
    TCATGGAGAA TATCAAAGAG TTGATGTATA CAAGACCAGT GTGTTCTGAT 
    GAGTATAGTG CAAAGATTCA GTTACAGAAA CAATTTTTAT CCCAAATAAT 
    CAACCACAAG GATATGGAGC TTCATCATTT AGGAGTTGCA CAAGATAGGT 
    TGAACGACAA GAAAGTGCTT ATTGTTCTTG ATAGCATTGA TCAGTCAATA 
    CAACTAGATG CTATCGCAAA AGAAAATCGG TGGTTTGGTC ATGGAAGTCG 
    GATTATCATC ACAACACAAG ACCAAAAAAT TTTGAAGGCN CATGGCATCA 
    ACTATATTTA CAAGGGTGGA GTTTCCATCA GCATATGAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15328597 [Map]; Strand: w
      • AT5G38350.1 - [+] show detail - Disease resistance protein (NBS-LRR class) family
        Distance: -62; Region: promoter
    Flanking Genome Sequence: 53-3650-1 - 3-prime edge 
    ATTATCCCTA ACAAATGAAG TGATCAATTA ATACATCAAT TAATATTCAT 
    AAAAAAAAAT CACAAACACA TCCAAAAATT ATGTATTGGT TGTCTTAATA 
    TTTTTAAAAC TTAGATTTGC CCAAATTGAC TCAAATTTTA GCATAAATAA 
    CCTTAAATAA CTCCCAATCC AAGTCAAAAA CTATTATAAC TCAAATATGT 
    GTAAAAAGAC TAATTAATCT TTAATCACGT TTTTAATAAA ATTTCTCCTA 
    AAATAAAAAC ATTTTTGATT TCTAAAAATT AAACAAATCT TCCGGATCTA 
    GTAAAAGTAT TTCGTAACCA AATGCAGTCA AACCCGTTTT TATGAAGAAA 
    AAAATGAACC TGTTTAAAGA TACAATCAAA CCGCAAGATT TGCAGTTG

AT5G38350.1

Model type
Protein coding
Short Description
Disease resistance protein (NBS-LRR class) family
Computational Description
Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR