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53-3677-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84381 [Map]; Strand: w
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-3677-1 - 5-prime edge 
    ATAAAGATGG AATCTTTTGT TCTGTTACAC TGAAAATTCT CAAATTGTAC 
    ATCATAATAG TTTGAACAGG AAAAAAAAAC ANCNCANGGA GGTTAGAAGC 
    AAAAGTCCAA AAATAATGAG ATCTCANACA AAAGNGTTTA AAANAAAAAC 
    AGAGACCTGA AGCTTTATGT TNGGTCTCAA CNCACTGAAG TNGCTCTATC 
    AGTCAACAGT CAACGTTCCT CAGCCGAGA

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR