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53-3691-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5504281 [Map]; Strand: c
      • AT3G16230.3 - [+] show detail - Predicted eukaryotic LigT
        Distance: 736; Region: intergenic
      • AT3G16240.1 - [+] show detail - delta tonoplast integral protein
        Distance: -1123; Region: intergenic
    Flanking Genome Sequence: 53-3691-2 - 5-prime edge 
    GTTTGAACGT AAGAAATTTG AATATGAGCT TCTTCTTGTT TTTTTTTGGA 
    NNAAAANNCC NGAAANAANC NGGTGGCTCC CANGGNTGGT GGCAAGGGGG 
    ANANCATTTT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5504396 [Map]; Strand: c
      • AT3G16230.3 - [+] show detail - Predicted eukaryotic LigT
        Distance: 851; Region: intergenic
      • AT3G16240.1 - [+] show detail - delta tonoplast integral protein
        Distance: -1008; Region: intergenic
    Flanking Genome Sequence: 53-3691-2 - 3-prime edge 
    TAATCAAACG AATAACTTGA TTGCTAAACA ACAAATCTAG ATAGCATTGG 
    ATTCATCAGT AAGAGTTAAA ATCGTACAGC ATTGTGAATC ATAAAATGTT 
    GTACAAGATT GTGAAATAAC AAATAATATT GTAAATTTAT CAAAAAAAAA 
    NGGGATNGGG GNTCAATGA

AT3G16230.3

Model type
Protein coding
Short Description
Predicted eukaryotic LigT
Computational Description
Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).
Link
InterPro Scan - TAIR

AT3G16240.1

Model type
Protein coding
Short Description
delta tonoplast integral protein
Curator Summary
Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
Computational Description
delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
Link
InterPro Scan - TAIR