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53-3715-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14743320 [Map]; Strand: w
      • AT2G34940.1 - [+] show detail - VACUOLAR SORTING RECEPTOR 5
        Distance: 0; Region: exon12 (3UTR)
    Flanking Genome Sequence: 53-3715-1 - 5-prime edge 
    GTGTCCATTA TGTCTCAGTA CATACCACTC GATAGCCAAA GCATTAACCA 
    AGACTCTTTT AAGTAAATAT ATAGGAACTC TTGTCATCTC AAATGAAGAT 
    TGTTGAATCT TGTTATATGG GTCCTTTTTG TAAAGAATCA AAATTTTGAG 
    GCGTTTATTT AAGGATTTGA AAGATTTATG CAAAAAGTTT AAAATTACGT 
    AAGTTAAAAA CTAAAAAAGA GATTATTGCT TTCATTGAGA GTTGAACTCA 
    AGACCTCCCG CTTACTAAAC GGGTGCTCTA ACCAACTGAG CTATGAAAGC 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14743204 [Map]; Strand: w
      • AT2G34940.1 - [+] show detail - VACUOLAR SORTING RECEPTOR 5
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: 53-3715-1 - 3-prime edge 
    ATGGACACGA TCTCTGAATC CATGTATGAC TGCAAAGTTG TAGTTTTAAT 
    GTATATATAA AAGGATCGTT AGAGTTTGAT GCAAAGGGTA AGTCATAATA 
    ATTAGTAGCA AAGTGACATT ACCTGAAGAT GGTACCTTGT AGAATATATA 
    AGCACCTAAA GAGATACCCG CGATGGCGGT TAGAACCACA ATTGTGAACA 
    ACCCTCTGCT TCTTGATCCA CTTCTTCTCT CTGCACATGT TTACATTGAG 
    ATTTTCCTTC TAATAATATC TGAAAATAGT TTTACATCGT TTTCAACATA 
    CCGATACAAG TGTCCTCTTC TTTCATGTAG ATACTATTGT TAGAACATTT 
    GCATTCATAT CCTCCCCAAT TGTTCTTGCA TTTGCAGCCA TCACATTTAC 
    AAGCTGATTT CTCTTTGCAT TCATCAATGT CTAGTTATTA GGAAGCAATA 
    AAGATTGGTC AGAGACAATG TCAAGGAAAC TCTGATGTTA CTATGACAAA 
    TTGTCGAAAC AATTTCACCT TCACATTTTA GACCATCTCC AAGGAAACCT 
    AGAGGGCAAC GACATCCTGA TGTCTCTGAG TCCTACATCA AACAAATACA 
    AAAGGTAAGA AAAAGTCTCA AACTTCAGCA AAGTGGAAGA AAAAGCAGCA 
    GTCACTTAAC TGAACAAGAA GAGAAAGTTA GACCCTTTCT GGTTTCAGAC 
    CAGCAGTCTN CATTGT

AT2G34940.1

Model type
Protein coding
Short Description
VACUOLAR SORTING RECEPTOR 5
Computational Description
VACUOLAR SORTING RECEPTOR 5 (VSR5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0; Bacteria - 175; Metazoa - 9320; Fungi - 5; Plants - 378; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).
Link
InterPro Scan - TAIR