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53-3729-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9497151 [Map]; Strand: c
      • AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3729-1 - 5-prime edge 
    AAATGCGTCT ACCTAACGGC CTCGTTTACT TGCCACGTAA ACTCAAATGG 
    CTATGGTGGG ATAATTGTCC ATTGAAGCGT TTGCCTTTTA ATTTTAAGGC 
    TGAGTATCTG GTTGAACTCA GAATGGTGAA TAGTGACCTT GAGAAGCTGT 
    GGGATGGAAC TCAGGTACTA ATTCTATTAG TGATCAATTT CTAAACATAA 
    ATATGGTAGA AAAACTAAAA TGAATCTGTT TAAAATGTTC ATTTTGTTTT 
    CAGCCCCTTG GAAGCCTCAA GCAGATGTCT CTGCGTGGTT CCAAATATTT 
    GAAAGAAATT CCAGATCTTT CTTTAGCCAT AAACCTCGAG AAAGTAGATA 
    TTTCTTATTG CGAAGTGCTA GAAAGTTTTC CAACTCCTCT CAACTCGGAA 
    TCTCTAGCGT ACCTCGATCT CCTACGATGC CCCAAGTTGA GAAATTTCCC 
    TGAGATTATA ATGCACAGTT TCAAAGGTGA AATTGACATC AAGGTAGCAG 
    ATTGTTTATG GAACAAGAAT CTCTTTGGAC TCGATTATCT CGATTGCCTT 
    AGGAGATGTA ATCCACGTAA ATTTCACCCA GAACTTCTCA AATACCTCAC 
    ATTGAGAGGT AACAACAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9535609 [Map]; Strand: c
      • AT4G16940.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
    2. Chromosome: 4; Position: 9548974 [Map]; Strand: c
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3729-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TCTGGTTTTT CTCGATTGCC ACCATGAACG ATATTGAATA TTTAGAAATT 
    GGAGATTAAG CATGCCTTGG AACGAGTTTT CATCTATTGA AATAAATGGC 
    TTATGGATTT GTGAATCTGA TGACGAGCTG AAATATAAAC CGAGCAATTT 
    TTCAGTGCCC TGACATAAAA ACCACCAAAG AAAACTATTA TTATCTCAAG 
    TAACAAAACA GTTTTTTTCT TCTTTCTTTT TGCTTCAACT TTATTAAGCA 
    AAAGGGAACA ATCGTAAAAG TTAATCGGTG AATAAAATGA TGCATTAAAA 
    GCAGCTGCAG AAAACTTACG GTTTTATCGG AAAAAACGTC TAGAATTTCC 
    TCATTATTCT TCAGAAATCG ACGATTTCCA GGATTACCCT TAGACTCTTC 
    ACGATCAATT TCTGTAGCCA ACTTCTCTAC CAAAGTGTGC ATTTCTACGA 
    TTTTATATGG TGTTATACGT ATGAGAGACT TATCATGCAA CGTTTTGAGC 
    CTAATGTTAA CATTAACAGC ATCTCCAAGG AAGTCTTTGA TGGATTTGAC 
    TTTCCAACCA TTGAATAACC ATGCAATGTA ATGGAATATA TCTTGATCTT 
    TTGGATCTAA TCTAACGTAG CTGACTCTTA ATGTTTTCAT AATATCTCTG 
    TTCAAACCAT TTTGGAGCTC AGCCAGCATC TCCATCCACT CTTCTTTGCT 
    CCTTCGTTTT AAAGACGAAC CA

AT4G16880.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16940.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16960.1); Has 22000 Blast hits to 14952 proteins in 582 species: Archae - 12; Bacteria - 1007; Metazoa - 1676; Fungi - 89; Plants - 18365; Viruses - 12; Other Eukaryotes - 839 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR