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53-3730-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24202741 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3730-2 - 5-prime edge 
    CATCGTGGAG AAGCTTTTGG AGGTGGAGGA GTCAATGGTT GTGGTGGTTG 
    TGGAGCTTTT GGGTTGCGAT GGAGACAGGT TGATGAGGCT GGCGAGGAAT 
    GAATTTGGGA ATTTCGTGGT GGTCAAGGCT CTGAGATTCA CCAAGATGTC 
    TAGGATGGAT CTGTTTTGGG GTTTGGTGCA GAAGCTCATG CCTTTTATCC 
    GTCTCTTGCG TAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233336 [Map]; Strand: c
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3730-2 - 3-prime edge 
    CCACGATGTA GCTTCCATAC TTCTTAAACG ATAGCTCAAT GCACTGACCA 
    TAAAGATTAA CGGCGATGTT GTGAATGCAA CGCGAGTCAT ACAGTGTAAG 
    CACATGTTGG ACCACAAAGT TCCCTGAAGC ATCGTTGCTT AGCCGGAGAG 
    CGTGGGATGC GACCAAGTCT AGTAGCTGAT CTCTGAAGTA AGGATCGTCA 
    GCGTCGGTTA TGATATCATT GAGCGCGATG CAGCCGTGCT GGTCACACGC 
    TAGGTCGAGA GCGTGGTAGA GAATGTGCTC GTACAATGCC TTTTTCATCA 
    CCTTGTCGAA AACGACCATG GCTCGTATCG TCACGTAGGA TGCGTATTTG 
    TCGGTCGAGA TGTGGAGGAA GCGGCGCAAG ATAGCGGCAC AGAAGAAGGC 
    GTCCACGTCA TCTGATTTGC CGAGGAGCTT CTGCACGCGT CTCGAGCCGC 
    ACTTGTTTGT GACGATCGAC ATGAAGTAAT CGGAGTCAGA CGTAAGCAAC 
    GAGGCCATCC TCTGAAGCTC TGTTTTGTCT GACTTTGAGA TCATCTCTTT 
    AAAGTAAGAC ACACCATCGC CGTCAGTCAT TAGGTTGAAC AGAGCTGCGT 
    GCAAGGGCGT GGCGGANGCG CGTGGGGCGA ATCCAGGAGG AGGAATGTAC 
    CCGGAGGTTT CTGTAGGGGT TTGGTAAAGC ATTGAACATG GTCGACATTG 
    AAAANGTATT ATCGGAGACT G

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60180.1

Model type
Protein coding
Short Description
pumilio 19
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 19 (PUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR