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53-3742-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212006 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-3742-1 - 5-prime edge 
    CCTCTTGTCG ATCCACTTGT GAAAAAATTC GGGACATTGG AGAAGCAGAT 
    CAAGATTCAG ACAAATGGTA GTGTGTTTGT CAAGGGATTT GGCAGTATCA 
    TCAGAAGGAA TAAAGTGAAG ACAACNGGAT AAGATGATAT TTGAGATCAA 
    GAAGACTGGT GATAATAACC TGGTTCAAAC AATCAAGATT CACATTATCA 
    GTGGATGATT ATTTATATCT CTCTCTCTCT CTCTCTCTCC ATCTCTCTGT 
    CTTTAGTNAC GTGTTNTGGA GTTAAATCAA GATTATTGNG GTGTATTGAA 
    TTAATGTAAG AGTTTTTAAT TTCTAAAACT TATCANATCT ATACAAATTT 
    GTAGTCTCTC AAGTCTCAAT AGCTTTCTTC ATTCATACAT ATAGAATGCA 
    TTGNACTTNA CGCTGTTCAT ATTAATATCA GANACATTAT AGTAAAATGG 
    CAAATGGGTN TGGGTTCTGT TTTGGTATTA TCCCTCAGTT TATGTNACAA 
    ATCAAANGCA GANAGATAAA TCACACANTG ACTATAAGNA CAACAGATCT 
    TGGGAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212118 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-3742-1 - 3-prime edge 
    GACAAGAACC GGTACGCGCC AGGGANGAGC ACCGGNCNGT CTACCNNTCN 
    CGCNAGCTGG GATGAGCTGC TTTATGAAAA AAAACATCAT AAAAACTCAC 
    AACCCAACGA TGTTAAAGTG AAAAGCTCTT TCACATTCAG TTTTTACTTA 
    CCAGTTGGCT TTTCTTCTTC GGATTAAGGA TCAGAGTAAA AGATGGGTTC 
    TCACGATCAT CCAGATACTG TCTTTCATCT TCATCATCAT CATCAGCCTT 
    AGCATGATCT CTAGAATCAA AAGCCTCAAC ATAATCATCA TCTTCAACAG 
    GAACATCATC AGCATCATTA TCAACATCTT CATCATCAGC ATCATTATCA 
    TCTTTCTCGA CAGCAGCTTC ATCAGCATAA TCATCACTAT CATTGTCTTC 
    ACCACAATTA TAATCAGAAT CGTCATCATC CTCATCAAGA GATAAAACAT 
    CATCACTGGC CTGATTTTGT TCATCACTAT CAGATTCCCA CTTTGATCTC 
    CTCGCTTTGA TCTGAACTTC TTCTTATCTT TTTACACATT GTCCTATGCT 
    CATAGATACA GAAATGGGAA ACAACTAGAG CCATCAAACT CAAACTCTAA 
    GAAATCTCCT CCCTTGAGAT CTTCGTCCTT CACAATCCTC TTCCACCCAT 
    TAACCATAAC GAATTTCTCA GTATCATCAT CACCACAACA TTTCTTTAAC 
    TCCAATTTCC AAATATTTCC AGA

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR