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53-3750-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15943070 [Map]; Strand: c
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: 5454; Region: intergenic
      • AT2G38090.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -1641; Region: intergenic
    Flanking Genome Sequence: 53-3750-1 - 5-prime edge 
    AAGATAACAA GGTCGTAATA ATGGAGTTTA GCGAGAGAGA GGTCGAACCT 
    TAATTATTAA TTAACGTATG AAATATAATC ATGATGATAT TCTAACAACA 
    TTTTTTTTTN GTNGGGTNNG CCCNTTCTAN CAATNTCTAA ATNCCAAAAN 
    CNGGTCCTAN GGTTNATTAT NAGTTNTNAC CNTAAAAATT NNCGGTANCN 
    TNTNTNTAAA ANGATTTNCC NAANTTNNAA NAATAATTTN TTTNTNGGAA 
    ATCTTTAAAG TNAAATNAGT TTTTNGTTTN NTTTTNGNAN CTCNACTAAT 
    TAAATTNANG TNTAGTTANC TNCTNTAANA TNAANGTNTN TTCNAANCNC 
    NTTNTNANCG GCANTCNCNC AAANCGTAAA TNAAATNCNT NCNGAAANGC 
    TAATNAANCC TTCAAANGTN CCTNATAAAC TCGTNTNTNG GNACCACCCT 
    NNCTTTTNTT NGNAAATNNC NCTAANGGAT TTNTTAAANC AAATAANCNG 
    NCNNNATTNA TTTNTAAANG GGTTAGGTAN CTTAAGNGAT CACCCCNTAC 
    CANACACAAT ANTTNTTGAA AGGGTTAAAA NTTTTTATNG TTNTTAATAT 
    NTCNCAGTNG AAAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15943186 [Map]; Strand: c
      • AT2G38080.1 - [+] show detail - Laccase/Diphenol oxidase family protein
        Distance: 5570; Region: intergenic
      • AT2G38090.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -1525; Region: intergenic
    Flanking Genome Sequence: 53-3750-1 - 3-prime edge 
    GTTATCTTAG ACACACAATT ATGATCACTA AACATTTACT ATACTATTTA 
    ATTACTTCCT TGATGTTGAA TTTTTTGCTG TGGCCGTTGA ACCAAGAAGC 
    TAAGCAAGGA ATCATCATTG CATATTAAAA TTATATTTGT TTGACAGTTC 
    TTTAATGTCG GTTTAGCAAA TAGTACGCCT AAAAATATTT ATTGCCATTT 
    CTTGTGCAAT TTATTCTGTC ACATGTCAAT GCAAAAAATT AACGCCTTTT 
    AGATCAATAT TGATTTAGAT GAGTACAACT ATTTTTGTAA AATTTTGTTA 
    GGGTTTGTAG TTTATACGTA TTTTGGCATT GTACTAAATT TTGTAGTTCA 
    TTTTATTTAT TTATTTTGTA ATTCATATTT TCGTAGATAA GTATAGTTTG 
    TGATAGGATA TGCCCCTTTA TGTTTCCTAG CATGCTAGTT TAACCACATT 
    CTCCAATGCT TTTTGTTATC GAGATTATGA TCCAAATTTA TATAGTATTA 
    AACGTTTCAT TGTCACAAAA TCATTTCCCC TTAGGAAAAA AAGAGAAAGT 
    ATCTCGATAT ACAAACAAAC AACTCATGTG CCCAAAAGGT TAAATGTCAA 
    CACCAATAGC AAATTACCGA AGTACCCTTA TAACCGCCTT AAATCTTGTT 
    AGCCAATGGG AGATGCTCCT CGATTGGGGN GTCTTGNCTG AGTCTGCGAT 
    TGGTTAATCT CTAAACGTCT TTGG

AT2G38080.1

Model type
Protein coding
Short Description
Laccase/Diphenol oxidase family protein
Curator Summary
Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
Computational Description
IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38090.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Link
InterPro Scan - TAIR