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53-3754-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24035502 [Map]; Strand: c
      • AT5G59660.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -185; Region: promoter
    Flanking Genome Sequence: 53-3754-1 - 5-prime edge
    CTCGCAAGTT TAGCTAAAGT GATTAGCCTA ATTATTTTGT TTTAAGAGTG 
    AGATAAGTGA ATAAGAAATC ACAACCCCCA CTCTATTTCT TTACTTCTAG
    AGTATTTGAT TTGGGACAAT ACATATGTCG CATTTGGTGA ATTAGTACAT
    TTGTTTAGTT TCTTGGTCAC ACAATATCCA TCTTACTTTC CAAACAAGCA
    ATGTTCCCTA TCTAGCGAGA ATGACTATGC CATGTTCATC TGACTATACA
    CAATTTAAAT TAATACTCTT CCAACTATTT TACAAATGTC TAACCAGAAC
    CACAAAGAGG AATTATCTTT TACGGTCAAT GATTATAAGC ATCCAATCCA
    CCACATATAC AAGAAAAATG AAAACATCAC TAACAAAGAG TATGATCTTG
    ACATGTCAAT GATCAAAACA AAAATGACAA ATAGCCCAAC CAATTATCAT
    GATTGTTGCA GCAATACTAT CTTGCCCTCG GAAACAACTC TGTGTCAAAG
    CTCATGCTCA CTTTAAGAGA ACTCTGAGAG CCCATCCTCG ATTTTTCAGA
    CACAAGACAT TCTTTCAGTT CATTAGCAAC TTGGGACATG TTTGGTCGTT
    TCACANAANA AGGATTCGCN CACGACATTG CCAGNTNAAG AACTCTCCNT
    ACANAACGAG ACTCNTAATC CCCGTGCAGG TTCNGATCCA TGATCTTNGN
    AATATNTNCT NCNNTAANCT CAACCCNACC CN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5711683 [Map]; Strand: w
      • AT1G16700.1 - [+] show detail - Alpha-helical ferredoxin
        Distance: 0; Region: exon9 (CDS)
      • AT1G16705.1 - [+] show detail - p300/CBP acetyltransferase-related protein-related
        Distance: -405; Region: promoter
      • AT1G16705.2 - [+] show detail - p300/CBP acetyltransferase-related protein-related
        Distance: -405; Region: promoter
    Flanking Genome Sequence: 53-3754-1 - 3-prime edge
    CTTGCGAGAC TTTAGTGAAA TGAAAGTGAG GACAGGTGAT TGGATAATGA 
    ATCCAAATTC GTTCTAGATA ATGGGCCGCG AAAAAATCAA TTCTGGCCCA
    AAACTAAGCT NCCANCCCGG NCCGTCAACC ACGCGTGGCC CTATAANGAA
    TCATAANTGN CCTGNTNTCC GAATACTACN CATGCTNNNT TTAAGATCAT
    GGGCAATCTT ATGTCTTTCT GAATTGNTTA TACAGACCTC ATGTGTNTCG
    GTTGCAAACT CANAGTTTGG TCCTTCCACG ATTGCNTCAA CAGGGCAAGC
    T

AT1G16700.1

Model type
Protein coding
Short Description
Alpha-helical ferredoxin
Computational Description
Alpha-helical ferredoxin; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity, metal ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion, respiratory chain complex I; CONTAINS InterPro DOMAIN/s: 4Fe-4S binding domain (InterPro:IPR001450), NADH-quinone oxidoreductase, chain I (InterPro:IPR010226), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), Alpha-helical ferredoxin (InterPro:IPR009051); BEST Arabidopsis thaliana protein match is: Alpha-helical ferredoxin (TAIR:AT1G79010.1); Has 11610 Blast hits to 10987 proteins in 2441 species: Archae - 1438; Bacteria - 7070; Metazoa - 154; Fungi - 106; Plants - 790; Viruses - 1; Other Eukaryotes - 2051 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16705.1

Model type
Protein coding
Short Description
p300/CBP acetyltransferase-related protein-related
Computational Description
p300/CBP acetyltransferase-related protein-related; BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2); Has 37 Blast hits to 37 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16705.2

Model type
Protein coding
Short Description
p300/CBP acetyltransferase-related protein-related
Computational Description
p300/CBP acetyltransferase-related protein-related; BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59660.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR