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53-3756-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8087907 [Map]; Strand: c
      • AT2G18650.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3756-1 - 5-prime edge 
    ATCATCTTCT TCATCTCTGG TCTTCTCCAT ATTCTTGTCA AATTCCTCCT 
    CACACCATCA AGAGAAAGCA GAGAAGATTA CTTCGACAAT GTTACAGCTC 
    TTCAAGGCCA GCTTCAACAA CTCTTTAACC TCCATGATTC TGGCGTTGAC 
    CAATCCTTAA TCGACACGTT ACCTGTTTTT CATTACAAGT CCATTGTCGG 
    TCTCAAAATC TCTCCTTTTG ATTGTCCTGT TTGTCTCTGT GAGTTTGAAA 
    CAGAGGATAA ACTTAGACTC TTGCCTAAAT GCAGCCATGC CTTTCACGTT 
    GAGTGTATCG ACACGTGGCT TCTCTCTCAC TCTACTTGTC CCTTGTGTAG 
    ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8087998 [Map]; Strand: c
      • AT2G18650.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3756-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTGATTA 
    TTAGAAGAAT ATTTGGAGTG ATTTTGCTGT TTAAATTTGA CAAGCT

AT2G18650.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
maternal effect embryo arrest 16 (MEE16); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G30400.1); Has 9180 Blast hits to 9159 proteins in 289 species: Archae - 0; Bacteria - 0; Metazoa - 2153; Fungi - 782; Plants - 4907; Viruses - 48; Other Eukaryotes - 1290 (source: NCBI BLink).
Link
InterPro Scan - TAIR