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53-3770-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24137511 [Map]; Strand: w
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3770-1 - 5-prime edge 
    TTCACGAGCA CCCTATATTT CCTTCGGCTC GGATCGTTTT TAGTACATGT 
    AAAGGCTGCG GTGTAGAAGA TTTCGTCTAC GGCGGGTACG TCTGCAATGA 
    TTCTGACTGT AAAGCTCGGT TTCATAAGGA GTGCGCNTGA GGCCCCATCT 
    GAGATCAGCC ACTCTTTCCA CCAACAACAT CCTCTCTTTC TCACCAATGG 
    CCTGGGAGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24137395 [Map]; Strand: w
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -17; Region: promoter
    Flanking Genome Sequence: 53-3770-1 - 3-prime edge 
    CTCGTGAATG GGTAGCTTTA CTGCTCCTGT ATCCATGTAT GATATATGTG 
    AATGAGATTC TTTCTTTTCT CTTTTTATTT AGGAGAAATG GAAGCTGAAC 
    GTGGAGGTTA GAGAAATTTT GATCCCATCC AACNTTCCAA CAAATATGAT 
    ACAGAGTTTC CAGATCAGGA TTGTAATATT TTTATTTTAA AGTCAAAATC 
    AAAATATTCG AATTTGATCC GAAATATGTT TTTACTTTTT AGATATATAT 
    TCTAAACTTA TAAATCATGA TTTGATAGCA TTGACTATCT ATTTCCGAGA 
    AATATTACAT TGCACAACAT GCTGTAGTTG TTATTGTTGC GTTCGATATT 
    ATATTTTAGC AATATTGTTT GATATGAATC GATTTAGCTT TTGGATTTCT 
    ATTGATTGTC AAAAGTAGTT GTTCAAAAAG GGGTTCCTCC TCTCGCTTCT 
    TCAAAAAGAC TAGTGAATGG AGAATAGTCA TGACAGATAA GATGTTCAAT 
    GGCAGGCGGT GATGGTTTTA TCCGCCCGCC CATAAATCAG GTAAAACATG 
    GTCTTATCCG TCTGTCAAAA AAGATTTTAT AATTAAATAA ATTTTTTTTT 
    TTTTNTTNGG GGNCAAATTT TAATTANCNG GAATAAAACC GGNAAATAAA 
    GGTTCNCCGN NAATTTTTTT TNAGGGGGGA ANCCCCCAAA AAANATCCCC 
    CGGN

AT5G59940.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR