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Mutant Lines
53-3779-1

53-3779-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 3225445 [Map]; Strand: c
- AT1G09910.1 - [+] show detail - Rhamnogalacturonate lyase family protein
  Distance: -904; Region: promoter
- AT1G09920.1 - [+] show detail - TRAF-type zinc finger-related
  Distance: 0; Region: intron2 (CDS)

ATGGCCTAGA TGCTGCTAGA TGACTGAAAT GACCTACATT TTCTTACGAA 
ATTCTTTCTG TTCTGTATTG AGAAGATAGC ATGCTCGATG TGCAAAGAGA 
CCATAGAACG TGAGATTTTC GATAGTCATA AAGGAGAAAT TTGCCCCAAG 
AGGATTGTAA CATGCGAGTT CTGTGAGTTT CCATTGCCTG CGGTTGATCT 
TGCCGAGCAT CAGGTATTCA CTCTGACTTG CACACTTCCT TTTCTCTCCA 
ACTAAAGGAT TTTCTGATCC GCTCGATTTT CCGAATATTA GGAAGTATGT 
GGCAACAGGA CAGAACTCTG TTATCAATGC AACAGCTATG TTAGATTGAG 
AGAAAGATAT AACCATGAAA CCAAATGCCC TGGCACTGTT GAATCATCCA 
GGTACATTTT CTTATCTTCA TTGTTTTATT TTGAAAACTC TCTGATTCAG 
ATCTTAATCC TTTTTTATTT GGCTAAACTC ATGTCATGAC ATGGATTGTA 
CAGAAGGATC

3 prime edge [+] show sequence

Chromosome: 1; Position: 3225561 [Map]; Strand: c
- AT1G09920.1 - [+] show detail - TRAF-type zinc finger-related
  Distance: 0; Region: intron2 (CDS)

TAGGCCATAC AAAAATCCTG AGTCTAAAAC AGAAACAAAA CAAATTCCTA 
CTTGTTATAC TGAATAACTA TTCTCGACCT AGTAATTGAA ACAGTCACAA 
CCTTGCAAAC ACAAGCTGCG CTTGGGGGAG TTCTTGTCAA CCATAAAACT 
CAAGAACAGT CAGGAACAAG CGTTGATAAC TAGCTGTTTG TGTTACACAC 
TAAGTTAAAA AGTCTAATAA ATGCATAAGT GATCTAATAT TTGTTAATTG 
AAACAAGCT

AT1G09910.1

Model type: Protein coding
Short Description: Rhamnogalacturonate lyase family protein
Computational Description: Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 300 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 45; Metazoa - 0; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G09920.1

Model type: Protein coding
Short Description: TRAF-type zinc finger-related
Computational Description: TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
Link: InterPro Scan - TAIR