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53-3790-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24086822 [Map]; Strand: w
      • AT5G59780.3 - [+] show detail - myb domain protein 59
        Distance: -3398; Region: intergenic
      • AT5G59790.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: -3893; Region: intergenic
    Flanking Genome Sequence: 53-3790-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AATGTCCTGA ATCCTGATCA 
    TTATCTCGTA ACGTTACGTA CGCCATTAAT AAAGATCCAT CTATCTATGG 
    GAATATTATT ACACCAACAA TAAAATAATG CTACTTTAGG AAAATCACAT 
    ACAATAAAAT TCATTTGTTT TTTTGGTTAG TTTAAGAGAT AAGATTATTT 
    ATTTTTATAT AGCGACATCT TGAAAACCTT TCCACCGCTA ATTATGAGAC 
    TCTGTCTAGT GAATATATAT GATTTTTATC TTCTTTTTTT TAATTAACTC 
    CACTAATTCA CCATGAATAA CTCCACCCCA CACATATCAA ATTATCTTAG 
    ATAAATATCG CATTATTTCA AATTAATAAT TATCATTAGA AATGTTGTTC 
    TTGGTTGAAA CGGTCAATCC AATATGATTT CTTGCAACCG ATTTAAAGTA 
    GGTCCTGACT TTTAAAATTT AAAATCCAAA TTTGTTTTCC GTCAACAACA 
    TATAATATAC AAATTTAAAT CTTAATGATA GCATATGCTA AAACAAACCA 
    ATAGATTACA ATTTTTAGAT TTATGATTTT TGTATTCAAC ATGTAGCTGA 
    TTTCTAAACT GTAAAACCCA AACATATGAT TTACACATCG TTGAGTCTCC 
    TATAGACGGA CCTTAGGATA TTCCTTAAAT TGTGTAATAT AGACGGGATC 
    ACGCCATCGT CACTTGCCAT ATTAGTAATG ATAATCTATT TGTTAATGAA 
    ATACTATAAT GAATAAAAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24086773 [Map]; Strand: w
      • AT5G59780.3 - [+] show detail - myb domain protein 59
        Distance: -3349; Region: intergenic
      • AT5G59790.1 - [+] show detail - Domain of unknown function (DUF966)
        Distance: -3942; Region: intergenic
    Flanking Genome Sequence: 53-3790-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTATCGTATA 
    ACCAGAGTCC TCGATGCTCT TAATAAGTAG GCTTATCCTC ATCTTATCTG 
    TAGAGAAGTC ATACGTAAAA AAATATGAAT ATGGTTTCAT GATTCATGGT 
    TGAAAAACTA ATTTTGAAGT TAGGAGATCA GGGTTTGAGT CATTCCAATG 
    CAATTCAATC ATAGGCCATT GTGAACGTTT TAAAATGACA AGAATATCCA 
    GTACTCAGGT TTTGGAGGTT AGTATGTGCT ATGGCTCATG ATGATCTATC 
    AGTTACGCAC GGACAAAGCC GGATCAATGA AATCCGGGGC CTCATTTAAA 
    TTAAGAAAAT AAAGTATTCT TATCGTTGCA GAAAAAAAAA AAAAAAAAAA 
    AAAGGGGGGN CCCNNNGGGG GGGNTTTNNN TTTTTNNGGG NNNNAANCNN 
    ATTTNCCCCC CNNAAAAAGG GNGGGGGGNA AAANTTNAAA ANNAANCCCT 
    NNNNNAAAAA NNNAAANCCC NGNAAAAANN CTTTNNNGGG GGGNNNNNNA 
    NNNNCCCNNG GNNNNNTTTT TANNNAAAAA AAAAANNNNN TTTTTTTTTT 
    TTTTNNCGTT TNANCCCCNG GGGAAAAANN TTTTTAAANN TTTNCCCNNG 
    GGGAAAAAAT TTTTTTNTNA AANNNATTTG NAANAAAAAA NNANNGGGGG 
    CCNCNNCCCC CCCTTTNAAT TTTCCGGGGG AAGNTTTTTT TTNGNGGGGG 
    GAAAAANGGG GGGNCCNNCN

AT5G59780.3

Model type
Protein coding
Short Description
myb domain protein 59
Curator Summary
Encodes a putative transcription factor (MYB59).
Computational Description
myb domain protein 59 (MYB59); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, regulation of transcription, DNA-dependent, response to chitin, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 48 (TAIR:AT3G46130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59790.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF966)
Computational Description
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT3G46110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR