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53-3793-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26055022 [Map]; Strand: w
      • AT5G65207.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2378; Region: intergenic
      • AT5G65210.1 - [+] show detail - bZIP transcription factor family protein
        Distance: -2601; Region: intergenic
    Flanking Genome Sequence: 53-3793-1 - 5-prime edge 
    ACTTGATCGT TGATTTGTGT GATACAAACT CATATCTTCT GGCAGAAAAG 
    GAAAAAAAAA ATTNCNCATT CAAANGAAGG TNTTNAATAT CAGGGCTAAA 
    AAGTTAAANG TNTNTCNGNC CAATTAATAT AGGTAAGNGA TAANCCNTTA 
    ATTTNTTATN TTTNGAAAAA GTANAANCTA TTANTTNCAA AACTCTNCCC 
    ANNAAANACT ANCTNACCNA ATNTNTAGNC NCAGGGGANC TTATGNGGTT 
    TNGCANGTTT TTTAAATCCN TTAATCGTTN CAGGGTAATA ANATNNCAAT 
    TNATNTTTAN CCNCTTAAAA ATNTNTNTGT CCAATGGGTT AATACTAATC 
    TAAATTNGTT TTTAAATNAA TATTCTTNGC TNATTTCGCA TNANACAACC 
    AATCCGGGTN TAGNATTTCC ATTCTGCTGG GTTNCAAATA ANNCTACAAA 
    ATNGGTTGGC GTATAAANNT TTATTNGTAA NAGGATAGAA ATCATCGTTT 
    NTGCCANTGA TTTCAACAAA AAAGGAGNGA AAATCCAAAC NCNAGGTAAC 
    CACTCGNGGN GGCAAACCAC TTTATAANAT AGCACTCGAC CGNNTNTGGN 
    TTNNAAAANA TCCCGNCCCC GGNCCGNNNA CCACNCGGNN CNNNAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26054906 [Map]; Strand: w
      • AT5G65207.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2262; Region: intergenic
      • AT5G65210.1 - [+] show detail - bZIP transcription factor family protein
        Distance: -2717; Region: intergenic
    Flanking Genome Sequence: 53-3793-1 - 3-prime edge 
    GATCAAGTGA GTACATGTTG ATAGAACTGG ACTCATGCAA TGCCACGTGC 
    ATGTGATTAA AGGAGATGCA AACTTTACTG ATAGGATAAT TAACAAAATA 
    TTATAATATG AAAATCAAAG CAAATTTCCA TAAAAAAATT GTTTAGGGAC 
    GTTATTAGAA CTTAGAAGCA AAGCAACCTT TGGCCCCCAT CAGTAGACCA 
    TATCTGATTA TACGATAGTA TAATATTATG ACTATGATAC ATCATACATA 
    TATCATATAT ATATGGACAT ATGTGATTGG TGATTGAGAG ACGTTTTGGG 
    TCATTGTTTG CGTCATACGA CTATGTTACT TAATCAGGCA TTTTAATATT 
    CTTAGAAATA TTTGTTTCTT AAAGCT

AT5G65207.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65210.1

Model type
Protein coding
Short Description
bZIP transcription factor family protein
Curator Summary
Encodes TGA1, a redox-controlled regulator of systemic acquired resistance. TGA1 targets the activation sequence-1 (as-1) element of the promoter region of defense proteins. TGA1 are S-nitrosylated.
Computational Description
TGA1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 4 (TAIR:AT5G10030.2); Has 731 Blast hits to 729 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 693; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR