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53-3795-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23457276 [Map]; Strand: c
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-3795-1 - 5-prime edge
    GTTGCTGATG ATCCTGAAAA CACAGTTGCA CGTTCCGTCC AAATCGGAGA 
    CACAGATGAG CACTCTGAAG CTGAAGAATG TTAGTTCTTT TTACTCTCTC
    TACTTCGATC ATATTCTTTT CTAAGCTAAT AATTTGTCTG TGCTTTCAGG
    CATTGCAAAT GAGCATGATC CCGACAGTCC TCAGGTATGT GCACAAGATC
    TAAACGGTTT TTGAACCTGT GTCAACTAGT TAACTCTTGC CCATCTTTGT
    GAAGCTAGTG GATGTATCCG TGCAGGATGT GATCTAAACA CTGATATGAA
    TT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23457392 [Map]; Strand: c
      • AT3G63530.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT3G63530.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-3795-1 - 3-prime edge
    TCAGCAACGT TCACCATGGG ATGATAGTCC CAATTTGTTC TCCCTATGGA 
    CATCCTCGAT AAATGATCGT TCATGTCATA TGAACCATAG AAAGAAGCAT
    TATCTGATCC TGAAAACCCA AACTTGTATG CATTGGTATT CATGGTCCAG
    TACAGATTGT CCTGAGAAAA AGGCAAACAA GAAACGTTAT GTGTTCGCCA
    CAATGCATTT GGTGTGTCTC TCTGAGATAT ATGAGCATAC ACAATGATAA
    GCTCATTTGA CAACGGATGG GACCTTTAAT TTACTTAAGT ACATAAGGTA
    CCTGAGGATG CATAGTTGCG GCATGATCGT AGTTAAGAGG CCCCTGAGCC
    GCACCACCAT AAAAGTCCAT GTAACTTCCA GTAGCAGCAT AAGGGAAACC
    TGTCTCCGTG TAATGAGCAT CTTCCACTGG TCTATTATCT CCATTCATTT
    CAGCTACTGC AATCGAGAAG AAGAAGAAGA CTGTGAGATG TATTTAAGGG
    AATTGGAACT AAGAAAAAAA TAAAAGGACT AGGCATTGGA GGGGACAGTG
    TTGAGAGCAA TGTCGGAGAG ATGAAATACC TTCCAAATAC CGAATGAACC
    TAGCAACTAG AAAATTTATC CAGGGGAAAA GAAAGGAACA AAACTATTTC
    TAGATTTGCA TAAACAAGAC AAGTCCCGAA AGCAGTAGTA GGTATATATG
    CAAGAAAGTG GATTANGGTC AGAT

AT3G63530.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 8059 Blast hits to 8045 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 2322; Fungi - 418; Plants - 4266; Viruses - 8; Other Eukaryotes - 1045 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63530.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Curator Summary
Encodes a novel E3 ubiquitin ligase that acts as a central negative regulator of Arabidopsis floral organ size. Organ size is limited by restricting the period of proliferative growth, rather than the rate of growth and appears to act in a novel pathway, independent of ANT and JAG. Both mRNA and protein are expressed in all actively growing regions of the plant and the vasculature and the protein is rapidly turned over by proteasome-mediated degradation.
Computational Description
BIG BROTHER (BB); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G19910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR