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53-3797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18825817 [Map]; Strand: w
      • AT2G45690.1 - [+] show detail - shrunken seed protein (SSE1)
        Distance: -82; Region: promoter
      • AT2G45695.1 - [+] show detail - Ubiquitin related modifier 1
        Distance: -176; Region: promoter
    Flanking Genome Sequence: 53-3797-1 - 5-prime edge
    GTTGNNGATT GATCCGTGGA CAACACNNGG ANTCAGTTAT CGGCCCGNTG 
    ANACGACANC ANTGACCGCT CTNAACGNGT GAACGAATGC GANAAGTTNT
    TACTCNACTC TACNATGATG ATANATTGGG ANAAGCNANN NGNCTGANNG
    TGCNNTNNAG CNTTGNGCNN GANCATGATN CCCACCNTGC TTNCGTANGG
    NCCNANGATN ACCNACNGGG NNCAGCAGCA CACACACTGN ACGAACCCTA
    GAAGAGCTGG GTTTTGAATT TGGTTCCTCC TGCAAACATC AACGACGATG
    CAATTAACTC TTGAATTCGG GTACGATTAT CACTTAATCT TTTCGTAATC
    GGAGTTTTGT TATTCGTAGC GTTNTTAGTT TTTACCTCAC TAAAGNTCTG
    ATTNTGACTN GGTGTCTTTN GAGATTATNN NCCTGANNGA NNGNNTGTNA
    TACTGNNNTN NNNGAACNNG AACCATGNGN GNGNNNNANN NGNNGNNNAN
    NGANNGNGAN NANNGANCNN NNCNNGGGNN NNNNNNGGGN GGNNNNCNNC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18802001 [Map]; Strand: w
      • AT2G45640.1 - [+] show detail - SIN3 associated polypeptide P18
        Distance: -618; Region: promoter
      • AT2G45640.2 - [+] show detail - SIN3 associated polypeptide P18
        Distance: -530; Region: promoter
    Flanking Genome Sequence: 53-3797-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GGTAGTGGTT AGGGGCATGC CAAATACGGA AAGGGAGGCA AAGAAGATCG
    GGTAGTCTTC ATAATTTCAT ACTTTTCACT TTGTAGTAAT CTTTCCTTTT
    CTTTTTTAAT TTCATCACCA ATGTTTCTTT GTTCAAATTC ATATCCACAC
    ACTCTTTTGG AAATGGCACN TGCAGCCTTC ATGTGAGGTG TGGGGTCATT
    GCGCCTTATC GTCTGAAAAT GTTACCCTCT TGACATTCAA TGACCCCATT
    TTCTTATTTT CCATAATTTA TTTTACCATT TTACTATAAC AAGAATGATG
    CAAAAGGAAT AGGCAAAAAA CAGCATATTA TTTTTTAGTG GGATC

AT2G45640.1

Model type
Protein coding
Short Description
SIN3 associated polypeptide P18
Curator Summary
Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.
Computational Description
SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250); Has 294 Blast hits to 294 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 52; Plants - 40; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45640.2

Model type
Protein coding
Short Description
SIN3 associated polypeptide P18
Curator Summary
Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.
Computational Description
SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250).
Link
InterPro Scan - TAIR

AT2G45690.1

Model type
Protein coding
Short Description
shrunken seed protein (SSE1)
Curator Summary
Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica.
Computational Description
SHRUNKEN SEED 1 (SSE1); CONTAINS InterPro DOMAIN/s: Peroxisome membrane protein, Pex16 (InterPro:IPR013919); Has 261 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 93; Plants - 47; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45695.1

Model type
Protein coding
Short Description
Ubiquitin related modifier 1
Computational Description
Ubiquitin related modifier 1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin related modifier 1 (InterPro:IPR015221), Ubiquitin-related modifier 1 (InterPro:IPR017188), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155); BEST Arabidopsis thaliana protein match is: Ubiquitin related modifier 1 (TAIR:AT3G61113.1); Has 341 Blast hits to 341 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 124; Plants - 33; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR