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53-3816-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218642 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -951; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3816-1 - 5-prime edge 
    AGAGGCACCA GCAACAACAG GGAGCAGCCA TGCGCTTCAG TTGATACAGA 
    TAGTGTAGGA AAGGAGAATG CTAAAGTTGA ATTGCCCAAA TTGAGTGTGG 
    AGCGACAACA GATGAAGAAG AAGAAAAAGA ATGCAGGGTT TAATTTGCGC 
    AAGAGTTTAG CATGGGATAG AGCTTTTTCA ACGGAAGAAG GTGACTTTTT 
    TTTACCAATT TCCTGTTAGT AGTAAAGGTC AAAGATTTGG TCTATGTTAC 
    TAAGAATCTT AAGATGTGTG ATATGGTCAT GAACCAGGTG TTTTGGATTC 
    ATCTGAGTTA TCTAAAATAA CTGGAACTGC TTGCCATCTT GGTGGAGATC 
    GGTTAGCTGC CATTCAGGAA GAGTACAGAG AGTCAATGTC AGCTTCCAAA 
    TGTAATGTTT CACCAGGACT ACAAGCACTT GAAGAAAACT TATTTAACGA 
    CTTGCCTGTG AATAGTAAAA ACAGAGAGAA GAAGCTNCCA GNCCNGGCNG 
    TAGGCCCTGG GGGCCTTTTG GAGTTGAATA TGACTTGACT TNATGTGTAT 
    GAATGAATAT AAGAACTTAA ACCGTAACCG GATCTTAAAG GCGTAAGAAT 
    TGTATCCTTG TTAAAAGACA CAAAGCCAAA GACTCATATG GACTTTGGCT 
    ACACCATGAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24218559 [Map]; Strand: w
      • AT5G60142.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: -868; Region: promoter
      • AT5G60150.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3816-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCNNTC 
    TGCAAAAAGT ATTAACCTTC ATATATCCGC AGAATACACA ACATTTATAC 
    TAATTTGCTA TTTTATCAAA TTAAGATTTA AACAATGCTA ATTCAGATGC 
    TTAAACACTC TAACAAAGGG AGAGAGAAAT TATCAGAACG AAGCTCGGAT 
    CGAGAACGAG AAATTGAAGC GCTTACCAAT TGGGGAAAAA GGAGGCCGAG 
    TAGGAACGAT ACGACTAGAT CTAGGGATTT GGAGAGGTGA GCATTTCAAA 
    TAACTCTTTC CTCGGCTCGA ATTAGTTTTC TTCGGCGTAT TCTTCAGAAG 
    CCAATTATCT TCGTCGTCTT CTCCAGAGAT ATCTAAGAGA TCCTTATCCA 
    TTTCTAGCTT CTCTTTCGAG CCCAAGATCT GACGATTAGG AAATCCGGAA 
    TCCTATAGCT AGGTTTTTTC AAACTTACAC TGAGAAAATC TCTTCGGAAG 
    TTGTAGGCGA AAATCCTAGN CGGTAAATCG GAAATTGTTC GGCCGATGGA 
    AGAGACGACT GTTGATAGAA TATCCCGGCC TCGTAAGCGG GAAGAGGTTG 
    AAAAACTTGA AATTGAAAGA AGATCGGACC AACGTTCTCT ATAATCTCAG 
    GGTTATTATT GTCATTTAAA GCAAATCGAT TGGGCCGGAC TTTAAAGCCC 
    ATTTATTTGA ATTTTAAATT CTCGTTCACC CTTTATTGGT TTGGTTTGGT 
    TAGGATAATA TTTNTTTCG

AT5G60142.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60150.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR