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53-3821-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24203678 [Map]; Strand: w
      • AT5G60110.1 - [+] show detail - pumilio 18
        Distance: 741; Region: intergenic
      • AT5G60120.2 - [+] show detail - target of early activation tagged (EAT) 2
        Distance: -4011; Region: intergenic
    Flanking Genome Sequence: 53-3821-1 - 5-prime edge 
    TGCCTCTATT ATTTAGGACA GTATTGTCAT TTTCTTATAT AGAATTGACC 
    GAAACTTAGG CCCATATATC GTGTTCCCGT GGGCCTCTAA TGACTAATTT 
    TCGAAAACGA CGGCGTTTTA GCAGTGTTTT NNCTTTTTCC AATTTGCAGC 
    CCTACAAGTA TAACAATAGA GAGAAACCTC TGTTTTCCAA GTTTTTGCTA 
    CAAATGTTCT ATGAATACAA GTCAATNAAT GTAAAAAAAA TTAAAACTCG 
    CATTAGTTAA AATCTTTATA ATTTGACATT AATGCTCTCA TTAGCAAGTG 
    ACAAGATCAA ATCCATTTTA TCTAGGGATC ATCGCAGTTA ANCTTNATGG 
    NCATTGCATN GAGCTCTCGT TTTAGAAGTA TGTAGTNACT TCTGTNTGCG 
    GAGGAGTCAA CGGNNGTGGG NGNNGNGGAN CTTTTGGNGN GGGANGGNGA 
    NNCNCCCCCN NGGCNNGCAA NANNNNNTGN GANAAAANNG GGGNAAANNT 
    TGGNAAAGAA GGNGGNNNNN GGNNGNNNNN ANGANNNNNN TNNANAAAAA 
    AAAAAAAAAA AAAAAAANNN TTTNNNGNGG GGGGGGGGNA NNANAAAAAA 
    ANNNNNNNNG

AT5G60110.1

Model type
Protein coding
Short Description
pumilio 18
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 18 (PUM18); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 19 (TAIR:AT5G60180.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60120.2

Model type
Protein coding
Short Description
target of early activation tagged (EAT) 2
Computational Description
target of early activation tagged (EAT) 2 (TOE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2.7 (TAIR:AT2G28550.2).
Link
InterPro Scan - TAIR