1. Home
  2. Mutant Lines
  3. 53-3826-1

53-3826-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9547101 [Map]; Strand: c
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 53-3826-1 - 5-prime edge 
    GTTTTACCAG GTGGAGAAGT GCCTGCATAT TTCAAGCATC GAGCATATGG 
    AAATTCCGTA AATATCACTT TACCTCGGAG ATCTCTCTCT CACAAATTCT 
    TGCGATTCAA TGCTTGTGTA GTGGTTGAAC CTCAAACCGA TTCTTATGGG 
    AGTGTGTATG TATACNTTCC AATACAAAGG CGGACGTTAT ATCCATAGAA 
    TAACTACTGA TATGACACTG ATGTGTAAGA CGGATCATCT GGTTTTGTGT 
    TCCTTCAAGT TCCGGCAGTT TAAAAATACT CTATATCCAA AGGTAAAGGT 
    CTTGGATAAT GTGGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9548559 [Map]; Strand: c
      • AT4G16960.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-3826-1 - 3-prime edge 
    GGTAAAACCA TAGTCTTCTT GAAGCATGAA CGTAGGATGA GTTCTCGTGC 
    ATCTCTATCC AATTTGAAGC AATTCTGGAA GTTAAAATAG TTTCTCAAAT 
    TCAGGCATCC AGCAAGATCT AATCTCTCGA GGTTTATGGC TAAAGAAAGA 
    TCTGGAATTT CTTTCAAATA TTTGGAACCA CGCAAAATCA TCTGCTTGAG 
    GCTTCCAAGT GGCTGATAAT AAAATAGGGG AAAATAGAGT ACACACGTTA 
    ATGAACATTT TACACAGATT CATTTTAGTT TTTTAAACAG ATTCATGTTT 
    AGAAATTGAT CACTAATAGA ATTAGTACCT GAGTTCCATC CCACAGCTTC 
    TCAAGCTCAC TATCCTCCAT TCTGAGTGAA ACCAGATACT CAGCCTTAAA 
    ATTAGAAGGC AAACGCTTCA ATGGATAATT ATACCACCAT AGCCATTTGA 
    GTTTACGTGG CAAGTAAACG AGGCCGTTAG GTAGACGCAT TCTGGTTTCT 
    CTCGGTTGCA ACCATGAACG ATATTGAATA TTTAGAAATT GGAGATTAAG 
    CATGCCTTGG AACGAGTTTT CATCTATTGA AATAAATGGC TTATCGATTT 
    GTGAATCTGT TGACGCGCTG AAATATATTC CGAGCAATTT TTCAGTGCCC 
    TGACAAAAAG AATCCGAAGA AAACTATTAT TATCTCAAGT ACAAAACAGT 
    TTTTTTCTTC TTTCTTTTTG CT

AT4G16960.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 19980 Blast hits to 13439 proteins in 492 species: Archae - 4; Bacteria - 689; Metazoa - 980; Fungi - 44; Plants - 17549; Viruses - 10; Other Eukaryotes - 704 (source: NCBI BLink).
Link
InterPro Scan - TAIR