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53-3836-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23430604 [Map]; Strand: w
      • AT5G57830.1 - [+] show detail - Protein of unknown function, DUF593
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3836-1 - 5-prime edge 
    CCTGAACCTG AAACTCAAGA GACGCAATCT CCATTTCCTT CTGATAAATC 
    AGATCTTCGA AAAGCACAAG AGATGTCTCA GCATGACACA TTTTCTCCTC 
    CGCCATTCTC TTGTACNTGA CTAGCTTCCA TCTCCAACAG CAGCTTTCTC 
    ACCTTGAAGC CGTAGAATCA TCGATAAAGC CTCGCTTGCA GCAGATGAAG 
    AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23430533 [Map]; Strand: w
      • AT5G57830.1 - [+] show detail - Protein of unknown function, DUF593
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3836-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGGCTTATAG ATGTAAATTA CTCAGCATTG GTTGCTCTGA TCCTGCTGTG 
    ATTGAGAATA AGTTCCCTGA AAATCTCATC TTTTACGGTG AAAACTCTCG 
    TGGCAATCAA AAGAGGAAGA TGAAGAGAAA TCTTTCGGTA ATTTAAAGCT

AT5G57830.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF593
Computational Description
Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G30830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR