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53-3839-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23776064 [Map]; Strand: w
      • AT5G58880.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3839-1 - 5-prime edge 
    GTTATATTAT GGAAAATTCT TGGATATTCG ATGAACATGA GCATCAAATT 
    CATGATAAAC CACCCGGTTT TGTCAGGGGT TTCAATGTTT TTACTCGTGC 
    TATACATTTT CCTCCCTTCT CTGTTCTTCT TCTTGATCTA TACATCACCG 
    GTTCTTGCAT GTGCTCTAGT GTATGCCCGA GAAAAGCTAG GGTTAAGATT 
    CTCAAGTTCG TATTCANAGC CAANGANGAG TTGTTGGAGG ANANNNNAAG 
    ANNCCATTGA ANGACNANCC AAACNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23775948 [Map]; Strand: w
      • AT5G58880.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -18; Region: promoter
    Flanking Genome Sequence: 53-3839-1 - 3-prime edge 
    AATATAACGA TGATCTCTTT CGTGTCAATG CCCATTTTCC ATATAATCTC 
    AAAAGATGAA AAATTGATAT GAAAATCAAT TGAAACAAGA TCCTTTTTTT 
    TCAGAGATCT AGCAAAGAAT CTGGCATCAA AGAAAAAAAC NTGATAAATG 
    GAGTATCTAA ATTTAGAGAA GTTATATCGT CTGGAGATCC TCTGTTTCAG 
    GATGTTAATT TTTCTTTCTT TCTTTCTATT GTTTACTTAA GAGGGAATTT 
    AAACGACAAA ACAGAAAAAA AAAGTTTTGT TAGTTAACGA TTTTTTTTTT 
    TTTGGGGGGT AAACCCCCAA NTTTTTTTTT TTAAANCCNN NNAAAAAAGN 
    TTCCCCCNTT TTNAAACCTT TTGNANTTTN AGGGGNNNAN CCCCCNAAAN 
    CCCCANTTTA ANCCCAAAAT TNAATTTTTN GNTTTTTTGN CCANNNTANN 
    NAAANTAAAT TTTTTTNAAA AANTTTNNAA AAATTTTTTC CCCNNAAACC 
    GNAAANGNNT TTTTTTNGGG CCCNTTTNGG GNCCCCNAAA NCCCAAAAAC 
    CCAATTTGGG GNCCCNTTNC CCCGNTTNAA ACCCGGGGGC CAAAAAAAAC 
    CNNAAANTTT TTTANCCCTT TCCTTTTTTT CCCGGNCNCC AAAAANCCNT 
    TGGTTTTTNN TCCTTNNCCC NCANTGGGTT TNGGCCNTNN AAANATTTTT 
    TTTCNAAAAA AAACNCCCG

AT5G58880.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR