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53-3842-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 183217 [Map]; Strand: w
      • AT3G01470.1 - [+] show detail - homeobox 1
        Distance: 0; Region: intron3 (CDS)
      • AT3G01472.1 - [+] show detail - conserved peptide upstream open reading frame 33
        Distance: 0; Region: intron3 (3UTR)
    Flanking Genome Sequence: 53-3842-1 - 5-prime edge 
    TGATGGATTC TCTCTATCAG CTTGTGTTGA AAAATAGGAA AAGCATATTC 
    TCTTTTCACT TGATGCTTTT TTTATTTTTC TCCTTTGGAC CAATTAAGGT 
    AAATCATTCA ATTTGTAATC TTGTTGAGAT AAATAATAGT CCCATGTATA 
    AGTACCTCGG ATCTGAGCTT ATCGTTGTCC ATGACGATGG TGTCGTAGTT 
    AGAAAGAAGT TGGTCGTAAG TGGACTTGAG AAGATCGTAG TCTCTCTCAA 
    GCTGTTTTGT TTTCCAACGA GCTCGGCGAT TCTGAAACCA GACAGCCACT 
    TGCCTTGGCT GTAGACCAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 183091 [Map]; Strand: w
      • AT3G01470.1 - [+] show detail - homeobox 1
        Distance: 0; Region: intron3 (CDS)
      • AT3G01472.1 - [+] show detail - conserved peptide upstream open reading frame 33
        Distance: 0; Region: intron3 (3UTR)
    Flanking Genome Sequence: 53-3842-1 - 3-prime edge 
    ATATATATAT AAATTAGAGG AGAGACTAGA AAAAGAAAGA AAATTGGGGA 
    ATCAAATCAA TCAACGAATT TAATTATCTT TTTATGGGAG GAGGTTGCTT 
    GTGTTGACCG TTGTGATTAA AGTTAGAATC TTTCCAACCC GACAGGTTAC 
    NTTCCCTGAC CGAAAAGCT

AT3G01470.1

Model type
Protein coding
Short Description
homeobox 1
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.
Computational Description
homeobox 1 (HB-1); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress, response to blue light, positive regulation of transcription, regulation of transcription, DNA-dependent, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 12515 Blast hits to 12478 proteins in 547 species: Archae - 0; Bacteria - 0; Metazoa - 9969; Fungi - 258; Plants - 2039; Viruses - 5; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01472.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 33
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF33 represents a conserved upstream opening reading frame relative to major ORF AT3G01470.1
Computational Description
conserved peptide upstream open reading frame 33 (CPuORF33); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR