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53-3848-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26288963 [Map]; Strand: c
      • AT5G65700.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 3716; Region: intergenic
      • AT5G65710.1 - [+] show detail - HAESA-like 2
        Distance: -3409; Region: intergenic
    Flanking Genome Sequence: 53-3848-1 - 5-prime edge
    CTATCGAATG GATCTCTGAC GCTGGAGTTA TGCTTATAAA CAATTTTATG 
    TACGTTGTAT CAGGAAACAT AAAACCTAGA GAAAAAGGAA AACTTGGCTG
    TGAGAGAGTC GAAATTACCA AACTATCCCC ATTGAAAAAA GGAAAACTAT
    TTTTGACCGT TGGAAATTTC GTTAACGTAA CAACGCCTAG TGGGCCAGTG
    GGTGAGCTGG AACTCCAATT TTGTTAGTGC TCAAAGGCCT CGACAAGTTA
    ATAACAAAAA TATAACTTTA AAGATTCAAA ATTCACAATC AGCAGCACTC
    AATAAAATTT ATTGTCGTCT AAACAGAGCC TACTCCACCT TTCGACACAA
    GGTGGCGCTT ATGCATGTTA AATCATTTTT CAAGATATTG GGCTTTTTTA
    GTTTTCAAAA GTAAAGCCCA TATTATTTTT GTGATTCGGC TTTTCAGGAT
    C
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26289079 [Map]; Strand: c
      • AT5G65700.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 3832; Region: intergenic
      • AT5G65710.1 - [+] show detail - HAESA-like 2
        Distance: -3293; Region: intergenic
    Flanking Genome Sequence: 53-3848-1 - 3-prime edge
    TTCGATAGCG ACTTCTCTTT CTCTCTCTCT TTTCTGATAT CAGAAAAACT 
    TTCTTTGTTT TCTCTCTTCC CTTTTCTCAT ATAGAAAAAC GTTCAGAGAT
    TCAAAAAAAA AGGTCGATTT TTGTTTTTTG GGGATGACGA TCATAAGCAA
    AAGCAAAGGA TGTCTTCAAG AGATCAAATC AACTTGCGCC GACTCCAACA
    CTCTGTTTTC AAAAGGTATT TTTCTTCCTT ATCTCTGTTT CTCTTTTATC
    TACTGTCTTG TTGGAATTTT TGGCCAAATC AACATCTTTT TATATGGTTT
    GTTAATCTTT AGTATCTAAT TATCTGGTTG ATCGCAAAAC AAAGAATT

AT5G65700.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.
Computational Description
BARELY ANY MERISTEM 1 (BAM1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT3G49670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65710.1

Model type
Protein coding
Short Description
HAESA-like 2
Computational Description
HAESA-like 2 (HSL2); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: HAESA-like 1 (TAIR:AT1G28440.1); Has 209953 Blast hits to 136246 proteins in 4591 species: Archae - 161; Bacteria - 21175; Metazoa - 62961; Fungi - 10773; Plants - 89081; Viruses - 373; Other Eukaryotes - 25429 (source: NCBI BLink).
Link
InterPro Scan - TAIR