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53-3849-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3953654 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -3052; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 3528; Region: intergenic
    Flanking Genome Sequence: 53-3849-1 - 5-prime edge 
    GAAGCAAGTA ATCATGAAGA AGCTNCCAGA CCGGGCCGTA AAGCANGCNT 
    GCGNTATGGA GTCGAATATG ACTTTGATGT CATGTGTATG ATTGAGTATA 
    ACAACTTAAA CCGNANCCGG NTCTTATAAG CCTAAGTAGG GNTNCCTNGT 
    AAGAAGACAC AAAGCCAAAN ACTCATANGG ACTTNGNNTN CACCATGAAN 
    NCTACAAGCC GCGGNCNGAG NCCTANCCTG GTCCTANNNC NNNCATGANN 
    TAATCAGGGT NAACCAAAGC TGGCGCAACN NATGCAGAAG TANACTTGAN 
    GAATNANGTG TTGTCAGCAG GAATTTGGAT GAAGNTTGCA CCANGAAGAA 
    CTGATGACAA TCTTCNATAC CATTGACGTG AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1261892 [Map]; Strand: c
      • AT2G03980.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 53-3849-1 - 3-prime edge 
    CTTGCTTCAA ATAGAAGTAA GAGGAAACTA AAAACATTTC ATTTTTTTCT 
    TGGCCACTAC TAAGACACAT TTAACTAAAA AGATTTTGAT TTTTGTTGCA 
    GAGATTGCAC AAGTTAGGAG CAAGGAAGTT CTTCATCAAC AACATTAAAC 
    CATTAGGATG TTACCCAAAT GTTGTAGCTA AGACCGTGCC ACGTGGAAGC 
    TGCAACGATG CTTTGAACTT TGCGGTCAGC ATTTTCAACA CTAAGCTNCC 
    ANNCCGGNCC GNAAGNCACG CGGGCCGCTA TGGCNTCGAG TNTTNCNACG 
    ATGANANGCG TACTGANGGC TTATAANATG CGGTNGCGGN TCNCATTCTT 
    ATACTCNATC ATNCGCATGA TAGCAGGNCN NCTCCNACTC CAANACNCTN 
    ACNGACCTTG NTTTNGCTTT NAAANNCTNC CANCCNGGNC CGNCNNCCNC 
    NCNGNCCCNT NTA

AT2G03980.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04020.1); Has 3198 Blast hits to 3166 proteins in 143 species: Archae - 0; Bacteria - 189; Metazoa - 0; Fungi - 13; Plants - 2979; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR