1. Home
  2. Mutant Lines
  3. 53-3859-1

53-3859-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24146117 [Map]; Strand: w
      • AT5G59960.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -784; Region: promoter
    Flanking Genome Sequence: 53-3859-1 - 5-prime edge 
    GGGATAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATAA 
    AACTANCACT ATTCACAATT CANAGCGAGG NATCANAATT AGAGNNAGAG 
    TCATAAGAGA TTATGAGTAA TNANACGANC TTTCACCANA TTGCAGTGTT 
    TCCATTGNTG AGAATTTANC ATAATGAAAA CACATTACAA AAGCGAAATA 
    GCAAAAAAAG GAAATCAAAT CTTGCTACAT TTACTAAAAT ACCTACATTG 
    ATATTCTCAA ATCTAATTTC CAGAAACAGA TCACCAAACA CAAATCTGAA 
    AAACCCTAAT TAACCGCCGA ATCCGTAGAG AGTCCTTCCT TGCCTCTTGA 
    GAGCGTAGAC AACATCCATG GCGGTCACAG TCTTCCTCCT AGCGTGCTCG 
    GTGTAAGTGA CAGCATCACG AATTACGTTC TCGAGAAAGA TCTTGAGGAC 
    GCCACGTGTC TCCTCGTAGA TGAGACCACT GATACGCTTG ACTCCACCTC 
    TACGAGCCAA TCTTCGAATC GCAGGCTTGG TGATTCCTTG GATGTTGTCT 
    CTCAGAACCT TCCTGTGACG CTTGGCTCCT CCTTTACCCA AACCTTTTCC 
    TCCCTTTCCA CGACCAGACA TTTTCTCGAG AGAATTAGAT TTCTTTTTTT 
    CGCTACTGTG TGAAGAAGAA TTGCTTTTGA TTTTCAGATA TTGACTGGAC 
    CGTGTTTGTT TATATATAAG ANGGCTTTTG TTTTCAACCA TCCGATTTAA 
    TNACCCATCT AACGGCTGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24136701 [Map]; Strand: w
      • AT5G59940.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -711; Region: promoter
    Flanking Genome Sequence: 53-3859-1 - 3-prime edge 
    TCCACCGGTT TATTGCAAAG TACTTCACAA AACATGAACG GGAACAATAA 
    CATAAGTCTC CAAAGTAACT GTATCGATCG ATTTACTGGT ATAGAACCAT 
    TTAATTGGAT CTAACTCTCT CTCGCATGTA TCACACCAAT AATTTTCATA 
    AGATTAAATA GGGGAAGAAT TGAGAAACCA CCGTAAAAGA TACACTCATC 
    AATTTAGAAT AAAACATCAA AGCCTTTTCC TCTCACATGA AAAATCGTAG 
    CAATGCCTCA CAGATAATAT GAGAAATGCA TCAGAAAACA TGAACGTGAA 
    CAAAAAAAAT ATACAATGTT ACCCTCACGA AACTTAAGGA TTACAGAAAC 
    CTTGCATCGA GAGTGACACC GGCTGCACAT TGGTCGAGTG TTGTGATTAT 
    TGAAAACCAC CTCCACGGTA TATACCCGGT AGTCAATGGT GCATCCTGGC 
    ATGAGACGTG AGAAATCTCC TAGTACGCAT TCCACATGCA ATGTGCCTCC 
    ACAACCAAAG CATGTATAGA ACCATTTACT TGGATC

AT5G59940.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59960.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR