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Mutant Lines
53-3874-1

53-3874-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 16010411 [Map]; Strand: c
- AT2G38220.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: intron10 (CDS)

TCCCCTTGGT TCTTTTTATC CTGCAAATAT TGTCAAATCA CAACGTTCAA 
TATTTTAGAT CAATCCCAAT ATGGTAAACA CATTACCATT ACAATTATGC 
AATCCAGAAG TTATACNTTA GTTGATAAAA AACTTACTTT GTTCCGCATT 
GGTAACAGGA GACGCAATGG CCACACGGGA GGAAACAACA ATCTCTTGGA 
GCATCAAAAC AAATGGCACA GAGACTTTTG TTACTTGCTT CGACATCATT 
ACAACAATCA TCGTCACCTT TGTCTGCAAG TAGACATGTT CTCACTGAAT 
CGTCTTCGGA TAAAAATCCC TCTCCACCAC AGCACTTTAA CTTGTTGCAG 
AAGTGTATAG CTACCAGCAT GAAGGAAAGC AACACACCTG CATACGCAAT 
AATACTACAT GTAATTGCTT CCTTGTTACA GAGAAACTAA CAAATGCTCA 
AATCCAATAA TCAAGTTGAC TTTGAAAAGA TTGAAAAGTT TACCTGTGAA 
GCT

3 prime edge [+] show sequence

Chromosome: 2; Position: 16010527 [Map]; Strand: c
- AT2G38220.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon11 (CDS)
- AT2G38230.1 - [+] show detail - pyridoxine biosynthesis 1.1
  Distance: -929; Region: promoter

CAAGGGGAGG TGTCCAATAT GTCNAANGAA AATGATGCAT GTGAAGCGAA 
TCTATACAGC TTAAGATGTA TCATTATCTG TCCAATGTGA TGTTGAATCG 
TTAGAGCATT AATAAAAATC ATATAATTTG ATATTGACAA GGCTCAGGTC 
TTTCTTTGCA TTAATTCGTT TCATCTCTTA ACCATCTTTG TGACAACACC 
ATTGGTTAAC TACCATAGGG TAGGCAATAT AGTGAACCAT TGTTTGTTGA 
CTCACATCAC GAAATGGTTC GAAACCCGAA TCGGTAATTA AAGATTTCAT 
AAATTAATTG TTAATTTCTG AATAAATTCG GATTTCGTAT ATTCCCTCCG 
TTTCGTAATA TAAGTAGTTT TGGACCAATT TTTTTGTTTC ACAACATAAG 
TTATTTTCAA CTTTCTATGT AAATAATATA TTATTTTAAT ATTTTTTGAT 
TATTTATATT ATGTAGTCTT TTTTATGATT AGCTGAACTT TTTAAAAATA 
AATATTTTTA ATTTGCATAT TTTTAGTTAA AACAATCGTA TATTGTGAAA 
TGGGAAGAGT ATGAATTATT GATTAAATAA TTAAGGACTG TAATTTATTT 
TATTAAATTT AATATTCTTT TCCAAATTCT CCACATATTT TATACCATAA 
AAAAAGAACA ACACCCTTAC ACACATAACA TATCCGAATC AGTGGTTCTT 
CGACATCACA CG

AT2G38220.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38195.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G38230.1

Model type: Protein coding
Short Description: pyridoxine biosynthesis 1.1
Curator Summary: Encodes a protein predicted to function in tandem with PDX2 to form glutamine amidotransferase complex with involved in vitamin B6 biosynthesis.
Computational Description: pyridoxine biosynthesis 1.1 (PDX1.1); FUNCTIONS IN: protein heterodimerization activity; INVOLVED IN: vitamin B6 biosynthetic process, response to absence of light; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 14 plant structures; CONTAINS InterPro DOMAIN/s: Vitamin B6 biosynthesis protein (InterPro:IPR001852), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G01410.1); Has 4179 Blast hits to 4172 proteins in 1294 species: Archae - 234; Bacteria - 2657; Metazoa - 13; Fungi - 160; Plants - 179; Viruses - 0; Other Eukaryotes - 936 (source: NCBI BLink).
Link: InterPro Scan - TAIR