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53-3896-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17921220 [Map]; Strand: w
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: 0; Region: exon1 (CDS)
      • AT2G43110.1 - [+] show detail - unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0...
        Distance: -840; Region: promoter
    Flanking Genome Sequence: 53-3896-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT AACTCGGTTG CTACAGGAGA GGTGTTTCCG 
    CTCGAGTCAG AGGTTAGAGT CTGTGAGGAG TGTAAGACAG GAGATACGGT 
    GACGATCGAG CTGAGTGATA GTGGTGGTTT ATTGACTAAT CACACGACCG 
    GTAAAAACTA TAAGCTGAAG TCGATCGGTG ATGCTGGACC GGTTATTGAT 
    GCNTGGTGGT ATTTTTGCTT ATGCGAGGAT GATGGGAATG ATTCCATCAT 
    TAGCTTAATC CTCTTCCATA ACCATGATGG TGTTCTTGTA TGCATAACTA 
    TTTGATGAAT ATTTGTGTTT TAGAGTTTTC TATTTTCTTA ACTTTTTTAT 
    GTTTGTTTGA TTTGGTATTG TTGTTGTTAC CTAAAGAATA AGAAATCAAA 
    AGCAAAATAG ACCGACATGT TCCAAGATAT GTGAATATGG TGAGTGTTTA 
    CTAAATTATG CGAATATTGT TGTTGCAACC TTATTTTCTT CCAAGTTGGG 
    CATCAATTTC CCTTTTTGGG CTTAGTCTTC TTTTGTTTGT AAATTTAGTT 
    TGTTTTAGTT TATTGTTGGC CCATTTCTGT AGGGTTTGGC CCGTTAAGTA 
    AGTACCATGT NAACCCAGAA AATTTACAAC GAAAACCCTT TAGCAAAAAA 
    GTAATAATTC CGTTGGTAAC TTTCTCATTG CAGTACATGG CATATTTTAC 
    TTACTCTACT AACCAATTTG GTTTGGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17921221 [Map]; Strand: w
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: 0; Region: exon1 (CDS)
      • AT2G43110.1 - [+] show detail - unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0...
        Distance: -839; Region: promoter
    Flanking Genome Sequence: 53-3896-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GAGTTACGGA AAAAGATTCT TGCGTAAGAC TCAGCAACTA TGGCTTTAGC 
    TCCAGCTGCT CCAAGACAGA CCGGAGCATG TTCACGTGAC GATCCGCAAC 
    CAAAGTTTTC GCCGCCGATT ATGATTGAGT ACTTTGATCT GTTCTCTCCT 
    GGCTCAATGA ACCGTGTTTT GTGGAAGTCT GGTAGACCAG AGAGAGCGTG 
    AGCGGCGATC TCATCACGCT CTTGCTGGTT CGATGGGAAG GTGCAAGCGG 
    CTCCTGCTGG GATGATCTGG TCGGTGTCTA TGTTGTCTTT CAAGACATAG 
    CAGAGGCCGT GGAAGGTTGT GTTGGCTAGG GCTTCGTTAG AGTCGGATTC 
    TGAGGCGGCA GCACGTGGGA TGATGGTCGG GGAGGATGTG CCACGTGAAG 
    TGATGGAGAT AGAGGAGGGG ATTAAGGAAG TGGAACCATT GAATCTTAAG 
    AAAGGAGATC GGAAGGTAGC CAAGGAGGAA GAAGTTTTGG TTGACGAGCA 
    AGGTAAGGCT TGGGGAAATG TAGGAAGAGA ATACGCCATT GTTTCTTTAC 
    TTTGTTGAGT GAGTGAGAGA GTTCACGATG AAAACAATTT AAAAGGAGAA 
    ATGTTTGTAC CCTCCTATTT ACGAAAGTGC CATTCAGAAT T

AT2G43100.1

Model type
Protein coding
Short Description
isopropylmalate isomerase 2
Computational Description
isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43110.1

Model type
Protein coding
Computational Description
unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR