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53-3913-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952426 [Map]; Strand: w
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1824; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4756; Region: intergenic
    Flanking Genome Sequence: 53-3913-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCTGACAGGT GAATGGTACA TACCTGGCCA 
    TAAGCTTTCA TGGNGNANCC TAAGNCNATN TGANTCTNTG GCTNTGNGTC 
    TTNTAACAAG GAAACNTCGT ACTTAGGCTT ATAAGATCNG GGTTGCGGTT 
    TAAGTTGTTA TACTCAATCA TACACATGAC ATCAAGTCAT ATTCGACTCC 
    AAAACACTAA CCAACCTTCT TCTAGCTTCT CAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18599988 [Map]; Strand: w
      • AT3G50160.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3913-1 - 3-prime edge 
    ANNAGNNNNN NNNNNNNNNG NGNGGGNGNN NNNNNNNNNN NNTTNNNNNN 
    NNAAGNTTGA AGNGGACNGA GTATTCCTNN CNANNGCCCC GACCGTGCTC 
    ATCCTTAATT NCACTNGGNN NGNNCTAAAN GGGTTANTAC ANCTACAACG 
    GCCCGATGTA TGGGACAAGG NACATGTGCA ACGACTTNCA ACNATTNTTG 
    CANCCACTAC NGGCCAACTA GGGAGGNGCT AACNGAAGAA GGCGGGTGNC 
    ACTGNNNAAA CGTACTCCGT CNAGGNCTCC TCCAATCTAA AGGGACATNG 
    GATGAGGATA TGATCATGGT GTNCGCAGCA ACCNCNANCN NTGATACATN 
    GCATGACTNA NCAAANAAAC NCCAGGGGNC GGGCNNCNNN AGCAANGGAA 
    TNCGNTTTNT TTTTTGGGAT ANCCCNATTC NAAANTGGGA TATNTAAANA 
    TACCCNANNC TACTAATCNA TGACNGTGAG TNAACAAGGN TTTTCTTNTG 
    NAGNANGANA TNCCGNNCTT CANNAGAGGG NAACNAANCN NNNNNNCNNT 
    ATCAANNATG NNTAAGANAC ANNATCACGN NCCGGGGNCG NNNGNAGCAC 
    CCNNNANAAN ATAAGNGAGG NTNNTTATAG ATAATACCCC NNGAGNCANN 
    ANNNATAANT ACACANACCN ACAACNTTNN NCNNAAGACT NGTGAGNNNT 
    NAGGNNNANG NNAGAAGAAN ACNGGNCANN ACNTCNAANG NTANNNGGAN 
    CGTTNNTNCG TNTNNNNTCN TCCGNCNAAG CTCNTGCTGG NTNGGGNNNC 
    ACACCCCTGN ATANCNNGCN CCCNGNCNNN TNNTTNANAA TATNNANNNA 
    GGNCNGCANG GGCGACANNT NCANNCATAA NATANCANNN NCNTATANCN 
    ANAGGNNGNT CANNANNGNA NANCAT

AT3G50160.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50150.1); Has 1156 Blast hits to 1033 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR