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53-3916-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2825992 [Map]; Strand: w
      • AT5G08690.1 - [+] show detail - ATP synthase alpha/beta family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3916-1 - 5-prime edge
    CCCATCCTCT GCTCCTGCTA AGGATGAGGG GAAAAAGACC TATGATTACG 
    GTGGCAAAGG TGCGATCGGG CGTGTTTGTC AGGTCATCGG TGCCATTGTC
    GATGTGAGAT TCGAGGATCA GGAAGGATTG CCTCCGATCA TGACATCTCT
    TGAGGTTCAG GATCATCCCA CAAGGCTGGT GCNTTGAGGT GTCTCATCAT
    TTGGGTCAAA ATGTCGTTAG GACCATTGCT ATGGATGGTA CTGAGGGTCT
    TGTCCGTGGA AGGAAGGTTC TCAACACTGG TGCTCCAATC ACTGTAAGTG
    GCTTCTCTGT CTAGATCCTT CTATCTTTGT TGCTGATCCG TAAAACAAGC
    CATTACTAGG TATAGATCTG TGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2825926 [Map]; Strand: w
      • AT5G08690.1 - [+] show detail - ATP synthase alpha/beta family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3916-1 - 3-prime edge
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCATTGGCGC AGCAGAGCTT GCCGGTGAAG AGGTCGCATA CTCGGCGACG
    CGGCCGAGGA GGTAGCTACA TGGAGCGGCG TGACGCGCGG GTGAAGGAGA
    AGGAAGCCTG GGGTTTCGGT TGACTAATTT GGCGGCAGAT CTACCGGAAG
    ATGAACNGGA GAAGAGATGA TAAAACTCTT CGAGACGCCA TGAGTGGGTG
    TGTGGAAGAG GAAATGCAAG CTAGGGTAAC TACAGCACCT GAATCTAAGC
    TCAAACTTTC CAATGTTTGG TGGGCTCAGA TAATGGGCTT ATTTTGAACA
    AAACAGAATA ATGGGCTTAT TTATTTGGGT CTTTATCATA ATAGAAAACT
    AAAGGATAAA AAAAAAAAAA AAAANGGGGG NCCCNTTNGG GGGNNNGGGG
    NAANTTTTTT TTNAAAAAAA NTTTTTTTTN GGGGGGNAAA TTTTTTTNAA
    NNNNAAANTT TTTNGGGGGN TTAAAAANTN CNAAGGGGNT TTTTTTNANN
    TTTTTTNAAA AAANTTNAAA AANTTTTTTN AAAAAAANNT TTTTTNCCCC
    NAAAAATTTT AAANGGGGGG GNTTNTTTTT TTTTTNAAAA AAAAAAAANN
    AATTTTTTGG GGAAAANCCC CNAATTTNCC CNCCTTTTTT TCTNNNCNNN
    TTTNNGNNCC CCCCNNNTTT TNNNAAATTT TTAAANGGGG GGGGGAATTT
    NCCCNAAATT AAAAAAANNN TTTTTN

AT5G08690.1

Model type
Protein coding
Short Description
ATP synthase alpha/beta family protein
Curator Summary
Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.
Computational Description
ATP synthase alpha/beta family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) RNA binding, copper ion binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport, ATP biosynthetic process; LOCATED IN: mitochondrion, nucleolus, mitochondrial respiratory chain complex I, chloroplast envelope, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATP synthase, F1 beta subunit (InterPro:IPR020971), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein (TAIR:AT5G08670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR