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53-3922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10821170 [Map]; Strand: w
      • AT2G25420.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 117; Region: intergenic
      • AT2G25430.1 - [+] show detail - epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembl...
        Distance: -1200; Region: intergenic
    Flanking Genome Sequence: 53-3922-1 - 5-prime edge 
    GTTATGACTT AGTTATTAAG TGGAGACAGA AGATTAGCGC TGGTAAAGTT 
    AATGCATTAT CTTTTTGTTC TTCAATAAGA TTGGAATATG TCTATCAATT 
    TGCAGGAACA GTAGTATTTT TTCATTATAT ATCTATTTTT ATTACACAAG 
    ATTTCTAGAT GGCTCATGGA CGGTGTCGGT GAGAGACGTC TAAATATAAA 
    AAAAAAATCA ACGCTTTCNA ACTTCNATTC CCCACTTACC TTTTTTTCCA 
    ACTGAAGTTT TATTAATAAT TNGTNGTAAA ACAATNGTAA ATTACAANGT 
    TCAAATAANA AAAACTAAAG CAGATGGNCN AAATAAANGT TTTNGGAGTT 
    AAATTCGGAN AAAAATNTGA TTTNTGCGGA ACCTNTNCCC TATGGAAAAN 
    AAGTTTTTAA AAAAATNCTN CTAAAAAANC NTAANGCANA AAAANCTCAA 
    NCCTAAAACA AAANAANACN AACCTTTTAN CTAAAANCAN TAAANCNTAG 
    GGGATGATTA GGGATGAGTT TGAAGNCTGT AAATTTTTAA CAATNTTTAC 
    AGTTTTAATT TTAACAATCA NACATTTTTC ACTTTTAATA ATTAAAAAGT 
    TNTCNCAACA TTTTCTTCTT ATTTGGTCCA TTGATTTTAG TTATTTTTTT 
    TATGNCTCGA AAACAAACCT TAAAATTTTA AAAAAAAAAA NGGGNTTNTT 
    TTCCCCCCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10821054 [Map]; Strand: w
      • AT2G25420.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 1; Region: intergenic
      • AT2G25430.1 - [+] show detail - epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembl...
        Distance: -1316; Region: intergenic
    Flanking Genome Sequence: 53-3922-1 - 3-prime edge 
    GTCATAACTA TTACAAGTAG AGGGAGCCTT TTGGCAGATG CTTTACGATG 
    AATAATACAC AAGAAGACAC ATTTATTACG AATTACGTTA CATAGACAAG 
    CATTCAAAAA GAGCAGTAAG CTCAATTACA TACAAAAAGA TCAGTTAGCT 
    CAAAGAGACA TACATAAAAC TAAGACAACC TCTGTGGTCA GTAACTATGA 
    TCTGAGTCAT TAGAATAATC TCCATTGTCT TCAAGTGGAG CTGCTTCACC 
    CCATCCTCCA CTCCACAACG GCTGAAGGAC AATGACCTTA CCATTACTAA 
    GCCCAGCCGA TATCTGATTA GGATGTGAAG GATGAGCGGC AACAACAGTC 
    GGATAAACCT CGAGCCTGTG CCATCCCCAG TTTAGTAGCA AAATCAATTA 
    CATCATTATT TAAACCAAAA TAGAAGTGTG GACAAGGAAA CTGTACCTGA 
    TGTTGCTGGT GCTGAGTTGA GTAAAAGAAG TCAGATTGAT TTGACATAGT 
    GTCATAAAAG TCTTGGAGTC CACAATTTTA ATAGATCCAC ATCTAAATCC 
    AACATAGATG ATCTCACCAT CGGAAGAATA TGTAGCAGAA GTTATTGCAG 
    GATCAGATGC ATCGGGTATC CACTGCGTAG CATTTTTTAT TTAGAGGCGA 
    TAAGGTAAAG CTAGAGGCAA GGGAATATAA TCAGAGAAGA GAGTCTACCA 
    ACAGTCTTTG CCTTTTACCT GCAAACGG

AT2G25420.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WUS-interacting protein 2 (TAIR:AT3G15880.1); Has 3410 Blast hits to 2683 proteins in 316 species: Archae - 2; Bacteria - 469; Metazoa - 1038; Fungi - 599; Plants - 625; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G25430.1

Model type
Protein coding
Short Description
epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
Computational Description
epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2); Has 1786 Blast hits to 1328 proteins in 221 species: Archae - 4; Bacteria - 135; Metazoa - 673; Fungi - 126; Plants - 678; Viruses - 2; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR