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Mutant Lines
53-3923-1

53-3923-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 24135554 [Map]; Strand: w
- AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
  Distance: 0; Region: exon1 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATGATG GNGTGGAACT GGAAGGGAAA GCTGANAATA 
TNGAGGATAT TGCAGCCATT TAAGGTGGTT GGGGATGACT CTGATTCTGT 
CATTTTAGTC ACAGCAAACA TTCTTTAAGA CTCCACAAGA ACAATATCAT 
TTATGATGAT AGTACACGAT GTGAAGCATG TGGCCATCCA GTCGAATTTG 
GTCGAATATA CAATTGTGAG GAATGCTGTT TCATTCTTCA TGAAAAGTGT 
GCTAATCTCC CTATGAAGAA AAGGCTTGTC TTTTCTACCT TACCATTCCT 
ATTACTGGGA CCGGGTAATG ATGTTTGCAA GGTTTTAGAT TGCAAGTTAT 
GTGGAATGTT TTTTACTGGT TTCGAGTACA AGTCCCAAGA AAGGAGGCAA 
AGCGATATCG ATGTACATTG TGGTTCCCTT ACGGAGCCGT TCGTCCATGA 
TGGCCATTTA CATCCCTTAT ATTTTGATCA AAAGCAAAAG GAGCTTCCTT 
GCAATGCTTG TCAAAAAACC ATAAGAGATT ATATGCTTTG TTGTGCTGAT 
TGTGACTTCA ATTTGTGTTT ATGGTGCGCT AGTCTGCCAA AAAAGATAAG 
GCATAGCAAC GATGAGCACA TTCTCACGCT ATGTTGTGGT GAAGAAGCAA 
ATGGAAAATA TTGGTGTGAT ATCTGTGAGG CAGAGTTGGA TC

3 prime edge [+] show sequence

Chromosome: 5; Position: 22974484 [Map]; Strand: c
- AT5G56810.1 - [+] show detail - F-box/RNI-like/FBD-like domains-containing protein
  Distance: -36; Region: promoter

CTTCTAATCT AATGAGCCGC CTATTCCTCA ACTCTTCAGC CAAAAATTAG 
GGTTTTCATA TTCCTCCTTC AGATCTAACG ACTTGGCGAT GGAAGCTGCA 
AGATCTGGAA TCGAAGATGT TACATCTCCT GATAGGATCA GCCAGTTACC 
TAACGATTTA CTTTTTCGAA TACTCTCATT AATCCCGGTA AGCGATGCAA 
TGTCCACAAG TTTATTGTCT AAACGTTGGA AATCTGTGTG GAAGATGTTG 
CCAACGCTTG TATACAATGA AAACTCTTGT TCCAATATTG GTTCTCTTGG 
ATTTGACCAA TTTTGTGGTA GGTCCTTGCA ATTACATGAA GCTCCACTTC 
TCAAAACCCT AACCCTAGAA CTTAGGAAGC AAACTGATTC CTTAGATTCT 
TCCATATTTC CAAACATTCA TTCTACTCTC CTTGAATT

AT5G56810.1

Model type: Protein coding
Short Description: F-box/RNI-like/FBD-like domains-containing protein
Computational Description: F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56820.1); Has 2124 Blast hits to 2085 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59930.1

Model type: Protein coding
Short Description: Cysteine/Histidine-rich C1 domain family protein
Computational Description: Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR