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Mutant Lines
53-3926-1

53-3926-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 2028181 [Map]; Strand: c
- AT5G06600.1 - [+] show detail - ubiquitin-specific protease 12
  Distance: -238; Region: promoter
- AT5G06600.2 - [+] show detail - ubiquitin-specific protease 12
  Distance: -236; Region: promoter
- AT5G06600.3 - [+] show detail - ubiquitin-specific protease 12
  Distance: -238; Region: promoter

GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA CTGATATGGN NATCTTANAA GCACNCCACT 
GCTTAGNNNT ANANGTATGA CAGATNCATC ANTAAAGANG TTATACAGCG 
CCGATNNCTG NNCTGGTCTG TCATCGCGTG GATNNACCCA ACCNTCGGAG 
AAATTATAAA TCTGAGCCCG TATACTNGTG AAATTACATT AATGACCCTT 
TAAATTCTCG AAAATATCAG AATAATCAAT ATATCGAAGC CGAGAAAGAG 
TAAGAATGAG CGATTGTATT TCTCCCTAAG AGTCACTTTG CCTTTGTCTT 
TGATTTTTCT CTGTATCGTC GGTCTCTCTT TTGCGTTTCT CGATCCCACC 
GTCTAATCCT TCTCCGGCCA ATGACTATGA TGACTCCGCC TCCCGTTGAT 
GTAATCTCCG ATTCTTCATC CTCTCTGCCT TTTGTCAATT CCATGTGTAT 
CCATTCGTGT ATTGGCGCTT GAATCTGCTT CTGATTGTTC GTTTAGTTGA 
TCGTTTCGGG TTTTTTTTCT TTTGGATTTG ATTTGAATTT TAAGCGGTTG 
AATCATCTTG CAGATGCAGC GATTTTTGTT TTCGGTGTGT TAGTTTTAGT 
GATTGGGGTT TCTATTTTTC TGTTCGTTTT GATCACCGTA GTGCGAGATT 
AGGGTTTTTT TTNGGGGATA TATNCTNAGN TNTTGGTNAT GNTTNGCANC 
NNCCAAAANA TGAGGAAATG CTTGGGCCNA ATTACNAGCC C

3 prime edge [+] show sequence

Chromosome: 5; Position: 2028217 [Map]; Strand: c
- AT5G06600.1 - [+] show detail - ubiquitin-specific protease 12
  Distance: -274; Region: promoter
- AT5G06600.2 - [+] show detail - ubiquitin-specific protease 12
  Distance: -272; Region: promoter
- AT5G06600.3 - [+] show detail - ubiquitin-specific protease 12
  Distance: -274; Region: promoter

GATATCACCT GACGTCGTGG GTCTTCTTTG CTCTTTGTTT TTTTTTCGTT 
GCTTTTANAT TTTTTTTTTA ANGACGGNNG GGAATCTNGA GGTTNCTTTN 
ATNNCATTAN CAANATNGTN AAATNGNATT NGNATNAATN CNGCCNGATT 
ANCNATGTTT TTTTTNNCCN NAAAAACCCA AANAAATNAN CCGGAAAANC 
ANGTGGTNNT AAAAAATAAA AAAAGGNGGC GNGATAANCA AAAAAAAACC 
NNNTTNGGTT NCCCTAAANG TNAAANNNNN TTTTTTNAAN NNGGGCCCAN 
CCNAAANCGG GNTTTTTTAA AAAAAANNNN NAAANTCNNT NNNNNGGCNT 
AAAANNTAAN NANCCCNNAA NNCCNAAAAA AAAAAGGNAA NGGGNNAAAA 
AACCAGGGCC CAATTTNANG NAAANGGNCC GGNATTTNGG NAANCTTTTG 
GNTTAAAAAN CTGGGTTTCC NTTAAAAGTT TGGGTTANGG NCNNGGGNNT 
TNNTTTTTGG GGAAACCNAA AANNTGNNCA AAANNGGTTT TGGNAATTGC 
NCCNCCCTTC CAAAATTCCC TTNNAACCCA GGNCCTAAGG GGTNGGNCCC 
NTNTTCCAAA ANCNAAGGTN GNAAAACNGG GGANGGGGGG GGCCCCGGGG 
GAAAAACCCT TAANTTNTAN NAAAAAAANG TTNTTNTTGN NNTTTTTTTT 
TCCCNATTNN AAANAAAAAA AAAAAANNC

AT5G06600.1

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06600.2

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.2); Has 8094 Blast hits to 7303 proteins in 267 species: Archae - 0; Bacteria - 2; Metazoa - 3813; Fungi - 1238; Plants - 1657; Viruses - 9; Other Eukaryotes - 1375 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G06600.3

Model type: Protein coding
Short Description: ubiquitin-specific protease 12
Curator Summary: Encodes a ubiquitin-specific protease.
Computational Description: ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR