Home
Mutant Lines
53-3929-1

53-3929-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2764360 [Map]; Strand: w
- AT3G09040.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
  Distance: -79; Region: promoter
- AT3G09050.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -291; Region: promoter

ACTGCAGTCC GACAAANAAG GAACCTTGCC GGAGCTAGAA CAGAGGTCTC 
AATTCCTCTA TAAACCATGA GAAACAAAAA GCATCCAAAC GAACAGGGTC 
GTCGTGAGTA AAGAAATTCG AAAAGCNTGT TTCAAAAAAA TTATACTTTT 
TAGCGGAAAA AAATGAGAAG AATCAACCTT TTCGGGTTGA CCCGTAGACC 
CGCCGGTTGT TGACTCGGAT TAGGACTCGT ATGTAGTGTG AATTAGAGGT 
TCTCTGGTCA TTTACAACAC ATAATTAGAG GTTCGATGAA GAAATTATTC 
TGTGTAAGTG TGAATTTAAA TATAGCAAAC CTATAAGCTC AAAACTTTGA 
ATATGGCCAA TTTATAAAGA AATTTATGTG TGGAAGTATG ACTTTAATGT 
AATTAAGAAA TATTAGAGCC AATCTATAAT AATGTCTCAA ATATAGGGTC 
TTTTATGCAA ATACTTTAAA ACTCAAAACT GGTTTTGGAT AATGCGTAAA 
CTAAATTAAA AAACGAGAGG TGGGTTACTC TGAAACGAGC CTTCTTCTTC 
TTCGTTGAAG AAAACATAGA AGATGATGAA CACACTTCAT GCATTTCAGA 
CAACCTTAAC ACCAAACTTT CATGTTCTTT TCAATGCCTC GAGACATTCT 
CTTTNCCGAC CCCAATTTCT CTGTCTCTCC AATCGGGAGA CGGACCTTCA 
GATTCTGAT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 2764244 [Map]; Strand: w
  - AT3G09040.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT3G09050.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -407; Region: promoter
Flanking Genome Sequence: 53-3929-1 - 3-prime edge
```
ACTGCAGTCT CAATCATGTA TTTCCGAGTT CTCTTGACGC CGTCCTCGGC 
CATGTTTGAT TCTTTCTCCT TTGTACGTCG TTTGAGTTAT TCCCCGGATT 
TGGGTCGTCG AATCTATGGA CATGTTTTGC CCAGCCATGA TCAGATACAT 
CAACNGTCTC CTAGAAATCT GTTTGGGGCA ATGCAAATTA TTCAAGAGTC 
GCAAAGTGTT CGACGAAATG CCTCAAAGAC TTGCACTAGC CTTGAGAATT 
GGCAAAGCTG TCCATTCCAA AAGCT
```

AT3G09040.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09050.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link: InterPro Scan - TAIR