1. Home
  2. Mutant Lines
  3. 53-3933-1

53-3933-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23999789 [Map]; Strand: w
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3933-1 - 5-prime edge 
    CAGAGAGGTT TGAAGATGCG AAAATGAAAA CGTGGTTTTT AAGGCGATTC 
    TTAGGAGCGG AATTAACGGT GTCGGATTAG ACGGTAAATA GACACGTGGT 
    GAGTGTTTGA CTGGGTAGAT GATAGCNGGA GTTATAAACN GGTCGTTACG 
    TATAGAGAAG GAGCGTTTTG ACCAAACGTG GAAAGTGTAA AACGCCGAGT 
    AGAAAATTCA AAAGAAGCGC CGTGTCTGCT GTTTGTGGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23999673 [Map]; Strand: w
      • AT5G59550.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3933-1 - 3-prime edge 
    CCTCTCTGTC ATTACTCTGG TCAGCGATTC TTCTTTCTTC TTCTTCTCAG 
    ATCCTTTCAC CGAGTAAGAA GATTTTAAAG ATGCCGTCAA CGCCGACGAC 
    GCCGACTACA ACAACGCCGA TCACGGCTTC GTATTGGTGT TACAGCTGTA 
    CGCGTTTCGT CAGCGTTTGG GCTGATCAAG GCACAACAAC CGTCGGTAGC 
    GTCGCTTGCC CTCACTGCGA CGGCGGTTTT ATCGAACAGA TTAACGATTC 
    TTCCTCCGCC GCTACCGAAT TAACGATTCC GGCTTCTACT GAAGTAAGAT 
    CGATCAATAA CAACCGTAGA TCCGTGATTA GACGCCGGAG ATCCGGTCGT 
    CGTCCGTCCT TTAATCCGGT CATCGTACTT CAAGGAGGCG CCGGCGAGAG 
    AGAAGAGGGA GAAGAAGGAG ATGCGGCTAG AGATCGACGC GCTTTTGAGT 
    TTTATTACGA TGACGGATC

AT5G59550.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR