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53-3938-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24215072 [Map]; Strand: w
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3938-1 - 5-prime edge 
    CTCACCACCA CATTTCTTAA ACCCTAATTT CCAAATGTTT CCAGAAATGC 
    TTCTAACGGT TACAGTTTTA GGCAAAGACT TTGGTAAACA GCTGTTGAAA 
    GAAATGGGTA GTACCTTGAA AAGTTTCTAC AAATTTCAAG CAACCAGAAA 
    ACAAAAAACA GAGTGAAGAG AAGTGTGTTT TATTACCAGA TCATCACCGG 
    ATTCACTAGG AAGGTACNGG TTTAAAGAAC TTTGAAGTAA AACCATTAGA 
    GTAATTTCCT GTTCCAAAAT AAGAAAAGGA AGAACATCAA TGTACAGAGC 
    ACATTACAAG GGAAGAATCA GGAACAGAGA AGTGAAAAAC CTCTTGTGTT 
    CATTGTCGTC AACTTCTTGT GCTCTTGGAA ATACTCTGAA CCCTAATTTT 
    GATCGGAAAT AAAAAGGTGA ACAAAGTTTC TCCAGATCCA AGTTTTTCCA 
    GATGTGATTT GATCTAAAGG TGTTGGCCTT TTGTAGCAAA AACTTGCAAA 
    AACAGAGGGT TCTCTCTGTT TCGATGCTTT TTCCTTCAAA TGGAAAACAA 
    ACCATTAATA GTACTCTTCT TATTCAAAAA TAATTCGTTA AGCGGACCAA 
    GGTATCGCTA AGGCCCAAAC AAAAAACAAG AAATGGGCCT TAAGTTTGGT 
    TCAATCTATA TCGTGTAAAT GACATTATCG TCCTTAAACA AAAGAACCAC 
    AGTAAAGAGT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24214956 [Map]; Strand: w
      • AT5G60140.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3938-1 - 3-prime edge 
    GTGGTGAGGT TGAGAGATTT GTTATGGTTA GTGGTTGGAA GAAGATTGTA 
    AGGGACGAAA ACCTGAACGG TGGAGATCTC TTGTCATTTG AGTTTGATGG 
    CTCTCATTTT TTTAATTTCT GTATCTTTGA CCATGAGACT ACNGTGTAAG 
    AGGCTTAAGA GAAGTTCAGA GCAAAGCAAG GACATCATCA AAGTGGGATC 
    TGATTGTGAA GAAGAATCTC AGGCTAGTGA TGATGTTATC GTTCTTAATA 
    GTGATGATTC TGACGATTCT GATAATGATT ATTCTGTTGA GGATGATAAT 
    GTTGCTGAGG ATGATGATGG TCTTGAGGAT GAAGTAGATG TTGAGGCTGA 
    GGATGGTTAT GATGCTAAGG ATAGTGATGG TCTTGAGGAT GAAGATGATG 
    ATGAGGCTGA GGATGGTTAT GATGCTAAGG ATGATGATGG TCTTGAGGAT 
    GAAGATGATC TTGAGGATGA GGATGACGAA AGGCGGTATC TGGATGATCA 
    CGAGAACCCG TACTTTACTA TGACACTCAA TCCGAAGAAG AAGAGCCAAT 
    TGGTAAGAGA AAAAAAAACC TGAATATTTA AGATCTTTAC ACACTCTCCA 
    TTTAACATCT TTGGTTATGG ATTCTTATGT GAATAAATTA ATAAGGAATA 
    TCTCAATCTG TTTTATGATG TTNGTTNCTT GATGCANCAC ATACCGGCTC 
    ATGTCNTAAG GGACTNTGAC TTAACCT

AT5G60140.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR