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53-3940-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25662927 [Map]; Strand: c
      • AT5G64120.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -1925; Region: intergenic
      • AT5G64130.1 - [+] show detail - cAMP-regulated phosphoprotein 19-related protein
        Distance: 1423; Region: intergenic
    Flanking Genome Sequence: 53-3940-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGACC AAAACTATCC CACTAATTGC CGGATTCCGC 
    AGTCTGTTAT CGACTCTTCT TATTATGACT TCGCTCAAAG TCAGCTTCCA 
    AAACATTATC AATTTCGAAT GTATTTATTT ATCTCTTAAA ACCACAAGCC 
    CTAAGTCTTC TGTCGAATGT CCATACATCA CGGACGGATG TGAGACGTTT 
    TTTTAACAAA CAAAAAAATA AAAATGTGAG ACGTCTAGTC GTATATACAA 
    GAAAATTATA CTGTGGATTA CCCTTTTAGA AGAAAAATAT GAAAACAATA 
    TTCATTAATA AAGATAATTG TATAATTAGA AACAACAATA TGATAGGAAT 
    GTGGTACAAT TTCATTTGTA ATACAGTGGT ACATAGGCTG TAAGTACATG 
    TCATACTTTG AAAATAGTTC GTTCTGCATG CATTCAAAAT TTGAATATGA 
    TTACATTATT TTTTTAATAC ATGTAAACGC AAATGCTAAA CAATATCCTT 
    GTTTGACACA GTCACGGTCA TAATCTCAAT CTTAGTTCAT TGGTTGAAGA 
    ACTAATATAA TAAAAACATA AATCGAGCTT TTGACAATAA CAAAAAAAAA 
    TATTTAGAGA GGCGTAGACA AATAAAGCTC ATAATATCCT CAAGGAAAGA 
    TGATCGTTTA NATCTTATCT TATAAAGTCA GCGGNCACAA TTTGAGGAAT 
    NTAACAATGA TACTATNTGA GACTGATACA AAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25648044 [Map]; Strand: w
      • AT5G64090.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3940-1 - 3-prime edge 
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACAACTC TGACTTGAGA 
    GACAAAAGAG AAGTTTTCGC TAGATTTTAG GAGTACCGAT ATAGAAGCAA 
    AGATTGAAAT TATTTGTTTC TTTCAGGATG AGGACTGATT TACACAGTTT 
    GTTTCTAATG GGGCAATTCG GGAAGATAAT AAAAGTTATG AGGTGGGTTT 
    GTTATGTATT TACTCTTCAA CTAGGCCACA ATAGGCCATC GGTTTCAAAA 
    GAGTAGAGAA CAATGAGCCC ATATTGTATG GGCTTGAGTT TTACGGCCCA 
    AATATTAGTT ACCGTCAGTA TTGCTTGAAG TCGGTAGGTA GTGTTTTTTG 
    ACGATCCGAA TGGCTACGAT TCTGTGATCT CTTTACACGT CGACCAAATC 
    ACCAACCGGA ATCTTTTTTA TTTTTGGAAA TAAGATTTGA TGCTTTTATC 
    ATACAATGGA AAATCATCTC GAGTATAAAT ACAAATCCAT GTGTGGAGCT 
    AAAGAGTAAA GAGTAAGTTA TATAATAACA TATGTCTCTA CTCTCGACCT 
    TCCAAATTCG TTTTAAAACA AAAGACGAAG TAACTTACTT TTTTTCTTTC 
    TCTGTAGATG AATCGTGGAG GCTAAATATA GAACTCATAT TAATCTTCCT 
    CTATTTTTTA CGTGTAATAT TTATCTATTC ACTTGCGTAC ATTAAGCTAT 
    CAATATTGAT AATTTGACAT GCTAAGTATT CCATTCAGAG GCAACAACAA 
    GTTCCATGAC TTAACTCGGG GGGTTAAAAA ATG

AT5G64090.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64120.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
encodes a cell wall bound peroxidase that is induced by hypo-osmolarity
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity; INVOLVED IN: defense response to fungus, N-terminal protein myristoylation, respiratory burst; LOCATED IN: apoplast, cell wall, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G39580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64130.1

Model type
Protein coding
Short Description
cAMP-regulated phosphoprotein 19-related protein
Computational Description
cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR