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53-3945-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19098589 [Map]; Strand: c
      • AT5G47040.1 - [+] show detail - lon protease 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3945-1 - 5-prime edge
    CTCCCGAGTA GGTTAGCGAT TCTTCCTTTC AGGAATAAGG NTCTNTTACC 
    TGGCAGCCAT TATTCGAATC CGTTGTACTT AATCATAGCA GGTGAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19098705 [Map]; Strand: c
      • AT5G47040.1 - [+] show detail - lon protease 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3945-1 - 3-prime edge
    CTCGGGAGCT CCACGGTTTC CGCCATTAAC GTCTTCTTCT TCGAGAAACA 
    AATTCTCTTG TAAATAAGAT CGATTTTGAT CGTCTTTTAT ATTATAATAC
    CGACGCATTT CTTCGTCGAC ATTATTATAT ACCTTTATCT GTTTTTTCTT
    TTGTTTAATA CATATTGTAA TGAAATTTGT ATTTAGTCCT TATATTAGTA
    TTTTCATTGA AACAATTACC CCTACTATTT ATATATTTAA AATAAAACCG
    CATTCTTGAA ATTAATTGTT ACTTCAATAG TTCGGATTTG ATTAGTTAAT
    TAAACAAAAT GTAAAATTAT TTTACTTTTA ACAAAGCAAA CTTACTATTT
    TTTGTATAAA AAATGTATTT TAGGTTCGTT ATCTTTATCA AATTTGTAAA
    ATATTTTTAA TTAATCGGCA TAAACAACAG TTAGACAAAT TGTTATATTC
    GGTTTATTTA CACACATAAT ATTATTTTCT ATATGTTTTA TAAATCCTAG
    TAAAATAAAT TAATATTTAG AAAATCGACA TTCTTCTCAT TAAAATAAGA
    TAGTTGCAAA ACATGGATTT TTTTTTTTTT TTNGGCTTNA NANNAAAAAN
    TTTTTAANTT TTNGNCCCAA AAATTNTCNT CNNAANNCCN TAAAANACCC
    CNAAANTTTT TTTTTNCCNT TTNAANAAAA NNANNATTTN AAANANACCT
    TTTTNNTTNN GGGGGNTTTN AAAAAAAN

AT5G47040.1

Model type
Protein coding
Short Description
lon protease 2
Curator Summary
Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.
Computational Description
lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR