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Mutant Lines
53-3946-1

53-3946-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 23524075 [Map]; Strand: w
- AT5G58130.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -278; Region: promoter
- AT5G58140.2 - [+] show detail - phototropin 2
  Distance: -352; Region: promoter
- AT5G58140.1 - [+] show detail - phototropin 2
  Distance: -412; Region: promoter
- AT5G58140.4 - [+] show detail - phototropin 2
  Distance: -412; Region: promoter
- AT5G58140.3 - [+] show detail - phototropin 2
  Distance: -529; Region: promoter

TCTGGGAGAG AAGAAGCCAC AGTCATTTTC TTAAACGTGT TCATTTTTCG 
TCTAATCAAA TCATGGCGCA TGTTCTGTTC TACTACAATC GTAAGTTTAC 
TGGGTTTTAT CTATTTATTG TTTATTCATT TTACATTGAA ACATGTCTGA 
ATTATTGTAC GTGGAAAAAT TGATGTGAGG GGTGTAATAA ATTCGTTTGA 
TTATGAAGAA AATTTGNGAA AGAAGAGGGA ATGATGAACA AGAGTGCACG 
TATTAAGAGG AAACAGAGTT GTGTGGTCCT TGACCTTGAG GGTGAAAAAG 
GGTCCATGTG AGTTTGATTA TTGATAGCGA TGTCTATCCT CCCAGGCTTN 
CGCATCGCTC ATTTGCAGCC TCAGAAACAT GATTGNCTTT TTAAAATAAC 
TCAAATAATA ATATAACTGG GTTTTGGAAA CAGTACAGTT GNGTTTTTTA 
ATTGGTCTAT CTCTCTATCT TTCTCATCGT CTTTGCTCCT TTTAAAGACT 
GTGTACTATA TTTCCATGAG TTGCAGCTGA TAAAGCTACT CTGGTTGGTA 
TATATATATT TTTCATTTAT TTTATCTACT TCACCTTCTT TAACGTGTTT 
TGTTGATTTG CTTCTAAAGA CTTTTAATGG CATTTATTAC TTTGTTTCTC 
GAACCTACAG NTGGNGTCTG CCTCTTCTTT CTATCTAACT TGGCTATGTG 
GGGNCTGG

3 prime edge [+] show sequence

Chromosome: 3; Position: 20506166 [Map]; Strand: w
- AT3G55310.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
  Distance: 0; Region: exon2 (CDS)

CTCCCATATG CTTTNNCNNA CGACCGAATG NACNCTNCNG NTNTTCTTTC 
NNTGTNTGTT TCAATAATGT CGNATNAAGC TTAATGAGAA TGGGACCCCN 
AAGCATCTTG TACATGCCTT CCTATTATTC CCANCTACAA GNCCATNNAC 
ATCCTATGAG GGTNTTTCTC TAATGGGCCT NATTANTTAA TCANTAGTGA 
ATATGGAGAA GGGGNNAGGA TCACNGCCGA GGGAGGGCTG AATCCGGCCA 
GTAGCATGCT NCNNTGGANG ATAAAAGCTN CGGATGGCGG CATGTAGGCC 
TTCACGGAAT GCTGGNTTGA GGAGATGAGC TGCTCGGTAG AGATGAGTCT 
TTCTCATAGA NANTGCTTCN NNNNGGNNCC GANGATGCCC GATAGAATTA 
CCNGCCATGG GCCGNTNACC CTCGNNCCNC CTTAATACAT AACAAAGGGC 
GGGTTTATGC CCAACCCGTA GGTTCTTCTA TCCTAGTCAA CACTCTTCTT 
CATCACCAAA TAGACAATTT AACGTGCCAA TGTCTCCACT GATTCTTTAG 
GTTTGATAAT TTTTATTTAT TGTTATCCTT AGTATTATTT ATTTACTTTT 
ATTCTTTTGA CAACTATGAA TACTTCAAGC AAAAATATTA TATAACCATG 
AGTTTCTCGC GGATTGATTG GTTTATTGAT TCTTTACTTT AGTACTTGTG 
AAGAATCTAA ACAAATATTG GATATAATTA TTTTTTCTTT TGTTTGGGGA 
CCAAGTTTGT

AT3G55310.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid elongation, unsaturated fatty acid, metabolic process, fatty acid elongation, saturated fatty acid; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.2); Has 128636 Blast hits to 128424 proteins in 3690 species: Archae - 1019; Bacteria - 82614; Metazoa - 6888; Fungi - 6972; Plants - 3216; Viruses - 5; Other Eukaryotes - 27922 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58130.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Curator Summary: Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.
Computational Description: REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58140.1

Model type: Protein coding
Short Description: phototropin 2
Curator Summary: Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description: phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116748 Blast hits to 111792 proteins in 3621 species: Archae - 310; Bacteria - 19900; Metazoa - 40386; Fungi - 12616; Plants - 24323; Viruses - 447; Other Eukaryotes - 18766 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58140.2

Model type: Protein coding
Short Description: phototropin 2
Curator Summary: Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description: phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116857 Blast hits to 111891 proteins in 3634 species: Archae - 310; Bacteria - 19970; Metazoa - 40401; Fungi - 12638; Plants - 24325; Viruses - 447; Other Eukaryotes - 18766 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58140.3

Model type: Protein coding
Short Description: phototropin 2
Curator Summary: Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description: phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 116115 Blast hits to 111145 proteins in 3570 species: Archae - 310; Bacteria - 19809; Metazoa - 40204; Fungi - 12201; Plants - 24204; Viruses - 440; Other Eukaryotes - 18947 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58140.4

Model type: Protein coding
Short Description: phototropin 2
Curator Summary: Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.
Computational Description: phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 25181 Blast hits to 21357 proteins in 1460 species: Archae - 236; Bacteria - 6754; Metazoa - 8411; Fungi - 2718; Plants - 3113; Viruses - 9; Other Eukaryotes - 3940 (source: NCBI BLink).
Link: InterPro Scan - TAIR