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Mutant Lines
53-3966-1

53-3966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 2790230 [Map]; Strand: c
- AT5G08600.2 - [+] show detail - U3 ribonucleoprotein (Utp) family protein
  Distance: 0; Region: exon12 (3UTR)
- AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: -65; Region: promoter

CCGGTGAGAG ATTTAGAGGA TAAGGAGAAG AAGAGTCGCA AAATGTCGAG 
AGGGGTTTTA CATGAAACAA AAAACACGAT AAGGGTTTTA AAGGGATAGG 
AAATGAAGCA AAGATAATTG GTAGTAAACG ATGCCGTTTC GTGCAACAGA 
TAAGAAACGG TATGTAGTTT GCTCCCATTG CTTAAAATGT AAATTGTAAA 
CAAAACGACA AGTGTTTTGA AAAACCTTAT AATTACTGAA TTACCCTTTG 
TCGAGTGTTC AATTTTAAAG CTGGATAATA TTAACAGAGT TACACAAAGG 
CCTTATAGGC TCAATACTTA GTGCAGTCCT AAGTGGCCCA TACCAAAGCC 
CGGAGACAAA AAGTTTTCAA TTTTTCTTAG TGGAAGAAAT GGTGATGAAC 
AAGGATTTGA AGAGCTATGA AATAAAACCT TTTTAAATGT TTCTTTTATA 
AATAAGACAA AAAATACAAA GAAAAATGGT ACCGTTGGGA TCAAAGTTTT 
GTGTCTAAAT AAGTTTGAGA ATGCAAAATC ATTGGTCCTT TACTTTGCTC 
TGACCTCTAT TGGTTTTACT TACCACCTTT TTTCTTGGGT TTTTGTTTCT 
GATGGCTCCG ANGGTGTTCG TCATTCGGAT TTACTTCCTC AAACTTGACA 
GGTTTAATGA TCACTCCAGC TTTCTTCACA ACCTGCACAC AAAATGAT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 2790294 [Map]; Strand: c
  - AT5G08610.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Distance: -1; Region: promoter
Flanking Genome Sequence: 53-3966-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TGCTCACCGG TCACCGACGA CGGGAACTTG GTAGTTACAG GAACAAGAAA 
TGTCCTCGAA GTTCCCTCTC GGTGTACGCT TCATCACTCA TTCTCTTCCT 
TGTACTCGTC TCGCTTCCAT GAATT
```

AT5G08600.2

Model type: Protein coding
Short Description: U3 ribonucleoprotein (Utp) family protein
Computational Description: U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT4G02400.1).
Link: InterPro Scan - TAIR

AT5G08610.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).
Link: InterPro Scan - TAIR