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53-3976-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24132716 [Map]; Strand: w
      • AT5G59920.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 1828; Region: intergenic
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -1810; Region: intergenic
    Flanking Genome Sequence: 53-3976-1 - 5-prime edge
    TCTTTTCGGA TCCAATATAT AGCTGTGACC TGTGAGCAAT GTTTTTTCAT 
    TATTAACACA TAACCTGCGC TAAACTTTTC AGGCTTGAGA TTCACAACAT
    TCAATTTCTC TAACTAGTAA ATATGGATCC ATAGTTTAGA TGGGCTTAGG
    AGCATAATCA TTTAGTGAAC GGTTTATAAG CCCATTTAAG ATTCATACCC
    TTAAAATGGC TTCGTCCACG CTATTCGTTA GTAGATAAGG ATTCAATTTT
    ACCTATTTGC CATTTGGTCT TCTAGGCATT TTCCTTCTAC ATCAGCAATG
    TATTTTGTAC GAGTCTAGGT TTCACCGTCA ACATTTCACA TTATGGATAG
    GATCTGGTTA ATTAGCAAGA TTTGTTTAAT CACAACGTGT CCTTGTTCCC
    TGGGAGCTAC AAGAGTTGGG GGCATGATGA GAATTTTTTC ATGTGGGCAC
    GAAAATTCAG GCCGTCAGCA CAGCTGGCCG CACTTATTAA TTCGAGAATC
    GTGATTAACA TCAGATTAAT AGGAAATCCA CTTGGTTTAT TAAACAAAAC
    AGCATTAAGT AATCGCATCA ATTAGAAGAT GATTGANGAC TAATCTCTTA
    GCTGTTCGCT AGTTTGACCT TTCATTTAAT TTTTCAGTGA CAAAGAACGA
    TTCAAATTCT GGACGATATG ACGACTTCTA TATTCAAGAA AAATAATTAA
    TTAAGACTNA TTAGNGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24132600 [Map]; Strand: w
      • AT5G59920.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 1712; Region: intergenic
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -1926; Region: intergenic
    Flanking Genome Sequence: 53-3976-1 - 3-prime edge
    CGAAAAGACA TGAAGAACAC ATGCTTCAGA TCGTTTACTT TCGTCCTTCT 
    TGAGCTTTAG TATGTTTTTT ATGGCTGGAA TTTCTTTATC AAGTAATCAC
    CAAGCCACCA ACTTGAACAG AGCAATATCT TTGTCATTCT CATGGATTCC
    ATTCAATTAT GTTCTACACC ATCACACTTT TTTTAGCAAA CATAAGCCAT
    CTAACTCTTT TCATGTTCAT AGCCGATCAC ACTCTAGTAT AACAATGAGG
    TTTGATTCTG TCTAGTTTCT TGAAAATGCA TGTATAAACA TATTGATGCA
    TTTTCTGTGA GAATTGTTTG GTAGTTTTCC TTAATTGCAT CACTTGTCGT
    CTCTTTGATT TTACAGTCTG CATCACTTGC GCTTGGGATG ATGGTTTCTC
    TTTCTAATGA AGTCGCTTAT CTTCTGTATA GGATTTTACT GATGCAAGTG
    AAACCTCTGG TATGAGTCAT CACATGTTTG CCTAGATTCC CCTGTCTGTG
    TATTGGGAGT TTTTGATGGT CGATGATGCA AATCTTGAAA ACTTAAAAGT
    AAGAATGATT GATTATTCTT GTGTAATGTT TTATTTGAGA GGATTTTTCA
    TAAGTGAACA CATTCAATGA TTTTTCATCC TTTGTAAAGG ATCTTATCTT
    TAAAAGATAG ATCCACTGAT GCAGAATACA AATCAGTTAT GGCAAATCGA
    ATGCTGTAAT ACTATTGATG TA

AT5G59920.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Curator Summary
Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses.
Computational Description
UV-B LIGHT INSENSITIVE 3 (ULI3); CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR