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53-3980-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2906567 [Map]; Strand: w
      • AT5G09350.1 - [+] show detail - phosphatidylinositol 4-OH kinase beta2
        Distance: -421; Region: promoter
      • AT5G09360.1 - [+] show detail - laccase 14
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 53-3980-1 - 5-prime edge 
    AACACTGTGT TCATTCCCCA TGTGGCATGT CTCTCTATAT GGCAATGCAA 
    CAACCACACC CCTTTAATAA ACAAATCAAA CCATGATCGT CAATATCTCA 
    AATTAGGCAT CACAAAAATT GTATTTTATT CTCATGAGTT GTCTAATAAA 
    TTCATATTTT TCATTTAAAC AATAATATCT TTTGTATAAA CTAATGCAAA 
    ATTGATATAT ATTTTCACGT GAAACGTTTG AGAAACGTAG AGTGTGAACT 
    GACCTGGATT ATTAGCTACG AATCTGACGG CGGTCCAACC GTTACGAGGA 
    ACACCGACGG TTGTCTCCTC CGGTGGATCA ACTAGGTTAT ACCTCAACGG 
    ATCTTTACGA CGATCGAAAT TCCCAAAACC CGAACCCACG ACGTAGAAGT 
    TATACCCATG CAGATGAATC GGGTGATTAT CTGAAGCCAA CACGTTCGTC 
    CCCTGTAGAA TCAGCTCAAC GCTCGAGTTA TAATCGAGAA CCACCACTTT 
    CGTCCCGAAC CTAGTCGGAA ATGGAAGATT CTCACCGGTG TAGTTGAATT 
    TCGTCGGCGG ATTTCTCGGG AAATCCTCCT GGAAAACGCC TCCGATGTGG 
    CGATAATAAG CTCGGAGAAT GTCGACCGAT GGGTTCACGA AGCTGATGTT 
    GTTAATGCTC GAAGAGAATC TCTTACCGAA CGGACCGGTA CAAGGTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2906454 [Map]; Strand: w
      • AT5G09350.1 - [+] show detail - phosphatidylinositol 4-OH kinase beta2
        Distance: -308; Region: promoter
      • AT5G09360.1 - [+] show detail - laccase 14
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 53-3980-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CAAGCCTCCT CCTGATCTTC CTTCTTGTTA GTGTTTATGA TCTTTTCTGC 
    CATTTTTGAA TGAAGTGTAG TCCCATAAAT GCTTTGGAAT CAAGAAAAGT 
    TTAGTTGTCC ATTATGTCAC TACCAAGATT TTGGTGTGGT ATTTAAATTC 
    AAAATTCAAA TGGCCATGTG AAACGAGACA ATAATAAATG GAGGGAAAAA 
    CCAAACGAAA TTGCAAAGAA AGATTCAGCT TGCGTGGTTT TCCAGCGCAC 
    GTTAGATCCC ATCATCATTC GACAAATTTA AAATAAAAAA ACTTTAATTT 
    TAAAAATACT GCCAACAATA GTTTTACTTC CTTTCTCTCT CTTTGTTGAA 
    TTGCCATCAA AAGCCTCCGA CAACGGCGGA GACGACGGCG ATTGAACTCA 
    GCTATTTTCA ACTCCGCATT TGAAATTTCT AAAGCT

AT5G09350.1

Model type
Protein coding
Short Description
phosphatidylinositol 4-OH kinase beta2
Curator Summary
Encodes a phosphatidylinositol 4-OH kinase, PI-4Kbeta2. Arabidopsis contains 12 PI-4Ks in three separate families: PI-4Kalphs, PI-4kbeta, and PI-4Kgamma. PI-4Kbeta2 is 83% identical to PI-4kbeta1 encoded by At5g64070. Important for polarized root hair growth as the loss of this gene and its close relative PI-4kbeta1, leads to the formation of abnormal root hairs.
Computational Description
phosphatidylinositol 4-OH kinase beta2 (PI-4KBETA2); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: phosphoinositide biosynthetic process, root hair cell tip growth, pollen tube growth; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Phosphatidylinositol Kinase (InterPro:IPR015433), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 4-OH kinase beta1 (TAIR:AT5G64070.1); Has 7223 Blast hits to 5858 proteins in 401 species: Archae - 10; Bacteria - 146; Metazoa - 2545; Fungi - 1184; Plants - 443; Viruses - 52; Other Eukaryotes - 2843 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09360.1

Model type
Protein coding
Short Description
laccase 14
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 14 (LAC14); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: central cell, fruit; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 9817 Blast hits to 8551 proteins in 1490 species: Archae - 32; Bacteria - 4030; Metazoa - 479; Fungi - 3363; Plants - 1557; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).
Link
InterPro Scan - TAIR