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53-3986-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24753344 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 53-3986-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT AGCTTGAACC TTTGTAGTCA AAATCATCAG 
    GTATATATAT CTTCAAAAAT CTCTCTATAG TTTCAACAAA ACCCTGATGA 
    TGATAAAGAA GAATGATGAT GATAATCAGA TCTTAGCCGT TGGAAATCCA 
    GAGATGGGAG ACGGAGCTTT AATCGTAGCG GTGGCTATCA AAGGGAACAA 
    TAGCAAAACC AAAGGCGTTG TTCGATGGGC ACTTCAAGAA TTTGCTTCTC 
    AAGAACATGT CGTCTTCAAG CTCTTACATG TCCAACCAAG TAAGTTCCTT 
    ATATTCTCTA AACTTCTACA AAAGTAACAG ACTTTAAGTC AAATTTAGAT 
    CTGATATTGT TGAGTTAAAA ACAGGAGATT CGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24753339 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 53-3986-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCC 
    TGGTTTCCTT AATCTCTAGT CGTGCTTAAA GAGACAAAAC AGAGAGAAGA 
    AGAGAGAGAG AGAGTCATGA ATTGGTCTGG TTTTTAAGTT TAATTAAATG 
    TAAGTTACAG AGACATTTTC TGGGCAAAAC AAAACAAAAC AAGTTGAAAC 
    CTTAATGGAT AATATTATAA TTTAGATAAC AAAATACTCA AAAGATAAAA 
    GATCTTGTTA GCCAATTGAA CGGCTATGAT CAATCATCAG AGTTGAAGAT 
    AGAGTACCTA TTGATATTTG ACTTGCAAGC T

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61560.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
Link
InterPro Scan - TAIR