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53-4001-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24129242 [Map]; Strand: c
      • AT5G59920.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4001-1 - 5-prime edge 
    CTCAGATGTG ATTAACTTGA GAGGATGAAT AGAATGACAA GGATGATTTA 
    CCTCTTCCGA GAGATGGACG CAGTTCACGT GGAAATACAT ATCGCATTCA 
    AGACATGAAT AGGATGGACC TTCAATAGAC TCCTTGCATA ATTCACAAGG 
    AACCTTCTCC TCTCGTATCT TCAAGAAGAC GACAGCATGA TCATGACACA 
    GCGGATGTTC GATAGCAGGC GGTGACGGTT TCATACCACA AGTCAAATCC 
    ACCTTGAACT CACATGTGGG ACAACTATAA CAGGGAGTCA ATAGCTTTTG 
    TCCACACAAA TCACATGGAC CATCTTTCGA GTCATTGGTG AGCAGGAGAG 
    GATGTTCAGG GTGGGAACTA TGGCTGATCT CCCCTGGGGC CTCAGCACAG 
    TCCTTATGGA ACCAAACATA ACAGTAAGGT TCATTGCAAA AGTAGCCGGC 
    GTACATGAAA CCATTTACAT GGCAGCCATC ACATTCATCA TCAATACATC 
    GAGCCGAAGG AAAAAGAGGG TGCTCATGAA TTGGTAGGTC TACTGCTTCT 
    GTAGCCATTC TTTTGATCGG GTACAAATGA AATTGGAANT NCAAAANGGG 
    GGGNNNNNNN NANTNNTTNN NNNANNANNN NNCNGGGCCN NNCNNCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24129358 [Map]; Strand: c
      • AT5G59920.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4001-1 - 3-prime edge 
    CATCTGAGTC ACTTACGGAT GATGCCGAGA AAAGTTGTCT TTTATGTGGA 
    AATATACCAG CTGAAAATAT GCTTTATCAT TGTTCCGTTT GCAATTTCAC 
    ATCGTGCCTT GGTTGTACCA AAAACCCACC ACTCCTTGTT ATTGAGCATA 
    TGAAGACCCA CAAACACCCA CTTACTCTCT TACCTAGAAG AATCTCATGT 
    ATCTGTGACG TTTGTGGGAA GAAATGCCAG TTTACGGCGT ATGTATGTCT 
    TCAGTGTGAT TTTGTTACCG CAAGAAAGTG TATCGACAGG CCCCGTGTCA 
    TCAATATCAA TCGTCATGAT CATCGCATAT ATTTAACTCA TCATCTCGGC 
    ACTGGGTATT CGGAATGCGG AGTTTGTCAC AAAAATGTAA GTCAGTACAA 
    GGGGGCTTAC TCTTGCTCTG TTTGCCCTAA CTATGCTGTT CATTCTACAT 
    GTGCCGTGAG AACTGACGTA TGGGATGGCG TAGAATTGGA AGGGACCACT 
    GAGATCACAG AAGACATTTC ACCATTCAAG GTGGTGGGTG ATAACTTGAT 
    ATGCCATTTT AGTCATGAAG AGCATCAATT AAAGCT

AT5G59920.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Curator Summary
Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses.
Computational Description
UV-B LIGHT INSENSITIVE 3 (ULI3); CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR